Job Description P76128 Confidence 100.00% Date Thu Jan 5 12:19:19 GMT 2012 Rank 7 Aligned Residues 476 % Identity 28% Template c3o9pA_ PDB info PDB header:peptide binding protein/peptide Chain: A: PDB Molecule:periplasmic murein peptide-binding protein; PDBTitle: the structure of the escherichia coli murein tripeptide binding2 protein mppa Resolution 2.07 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	K	D	M	L	V	I	G	K	A	A	D	P	Q	T	L	D	P	A	V	T	I	D	N	N	D	W	T	V	T	Y	P	S	Y	Q	R	L	V	Q	Y	K	T	D	G	D	K	G	S	T	D	V	E	G	D	L	A	S	S	W	K	A	S	D	D	Q	K	E	W	T	F	T	L	K	D	N	A	K	F	A
Query Conservation
Alig confidence																																															.	.	.	.	.												.
Template Conservation																																															.	.	.	.	.												.
Template Sequence		A	E	K	Q	E	L	V	R	H	I	K	D	E	P	A	S	L	D	P	A	K	A	V	G	L	P	E	I	Q	V	I	R	D	L	F	E	G	L	V	N	Q	N	E	K	G	.	.	.	.	.	E	I	V	P	G	V	A	T	Q	W	K	.	S	N	D	N	R	I	W	T	F	T	L	R	D	N	A	K	W	A
Template Known Secondary structure			S									S	S			S		S		T	T	T			S														S					T	T	S	.	.	.	.	.					S	S						.		S	S	S	S								T	T		B		T
Template Predicted Secondary structure																																															.	.	.	.	.												.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.						.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	G	T	P	V	T	A	E	A	V	K	L	S	F	E	R	L	L	K	I	G	Q	G	P	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	P	K	D	L	K	I	D	A	P	D	E	H	T	V	K	F	T	L	S	Q	P	F	A	P	F	L	Y	T	L	A	N	D	G
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	T	P	V	T	A	Q	D	F	V	Y	S	W	Q	R	L	V	D	P	K	T	L	S	P	F	A	W	F	A	A	L	A	G	I	N	N	A	Q	A	I	I	D	G	K	A	T	P	D	Q	L	G	V	T	A	V	D	A	H	T	L	K	I	Q	L	D	K	P	L	P	W	F	V	N	L	T	A	N	F	A
Template Known Secondary structure		T	S		B																G	G	G			T	T	T							T	B	T	T						T	T	S	S		G	G	G	S	S						T	T						B	S	S			T	T						T	S	G	G
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		A	S	I	I	N	P	A	V	L	K	E	H	A	A	D	D	A	R	G	F	L	A	Q	N	T	A	G	S	G	P	F	M	L	K	S	W	Q	K	G	Q	Q	L	V	L	V	P	N	P	H	Y	P	.	G	N	K	P	N	F	K	R	V	S	V	K	I	I	G	E	S	A	S	R	R	L	Q	L	S	R	G	D
Query Conservation																																																					.
Alig confidence																.	.	.	.																																		.
Template Conservation																.	.	.	.
Template Sequence		F	F	P	V	Q	K	A	N	V	E	S	G	K	E	.	.	.	.	W	T	K	P	G	N	L	I	G	N	G	A	Y	V	L	K	E	R	V	V	N	E	K	L	V	V	V	P	N	T	H	Y	W	D	N	A	K	T	V	L	Q	K	V	T	F	L	P	I	N	Q	E	S	A	A	T	K	R	Y	L	A	G	D
Template Known Secondary structure		G										T		T	T	.	.	.	.	T	T	S	T	T	T				S	S	S								T	T	T								T	T	S	T	T	G	G	G				S																				T	S
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	I	A	D	A	L	P	V	D	Q	L	N	A	L	K	Q	E	N	K	V	N	V	A	E	Y	P	S	L	R	V	T	Y	L	Y	L	N	N	S	K	A	P	L	N	Q	A	D	L	R	R	A	I	S	W	S	T	D	Y	Q	G	M	V	N	G	I	L	S	G	N	G	K	Q	M	R	G	P	I	P	E	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	I	T	E	S	F	P	K	N	M	Y	Q	K	L	L	K	D	I	P	G	Q	V	Y	T	P	P	Q	L	G	T	Y	Y	Y	A	F	N	T	Q	K	G	P	T	A	D	Q	R	V	R	L	A	L	S	M	T	I	D	R	R	L	M	T	E	K	V	L	G	T	G	E	K	P	A	W	H	F	T	P	D	V
Template Known Secondary structure			S	B		S				G	G	G								S	T	T	S																T	T	S	S	G	G	G	S											S									T	T		S	S					S	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		327	.	.	330	.	.	.	.	.						.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.				.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.																						.	.	.
Query SS confidence											.	.	.	.	.																						.	.	.
Query Sequence		M	W	G	Y	D	A	T	A	M	.	.	.	.	.	Q	Y	N	H	D	E	T	K	A	K	A	E	W	D	K	V	T	S	K	P	T	.	.	.	S	L	T	F	L	Y	S	D	N	D	P	N	W	E	P	I	A	L	A	T	Q	S	S	L	N	K	L	G	I	I	V	K	L	E	K	L	A	N	A	T	M	R
Query Conservation											.	.	.	.	.																						.	.	.
Alig confidence											.	.	.	.	.																						.	.	.
Template Conservation
Template Sequence		T	A	G	F	T	P	E	P	S	P	F	E	Q	M	S	Q	E	E	L	N	A	Q	A	K	T	L	L	S	A	A	G	Y	G	P	Q	K	P	L	K	L	T	L	L	Y	N	T	S	E	N	H	Q	K	I	A	I	A	V	A	S	M	W	K	K	N	L	G	V	D	V	K	L	Q	N	Q	E	W	K	T	Y	I
Template Known Secondary structure		S	T	T											S																	T		B	T	T	B										S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	V	G	K	G	D	Y	D	I	A	I	G	N	W	S	P	D	F	A	D	P	Y	M	F	M	N	Y	W	F	E	S	D	K	K	G	L	P	G	N	R	S	F	Y	E	N	S	E	V	D	K	L	L	R	N	A	L	A	T	T	D	Q	T	Q	R	T	R	D	Y	Q	Q	A	Q	K	I	V	I	D	D	A
Query Conservation
Alig confidence																																	.	.	.	.
Template Conservation																																	.	.	.	.
Template Sequence		D	S	R	N	T	G	N	F	D	V	I	R	A	S	W	V	G	D	Y	N	E	P	S	T	F	L	T	L	L	T	S	.	.	.	.	T	H	S	G	N	I	S	R	F	N	N	P	A	Y	D	K	V	L	A	Q	A	S	T	E	N	T	V	K	A	R	N	A	D	Y	N	A	A	E	K	I	L	M	E	Q	A
Template Known Secondary structure				T	T	S	S			S									S	S	S	S	T					G	G	G	S	T	.	.	.	.	T		T	T		T	T															T	T			S
Template Predicted Secondary structure																																	.	.	.	.
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430					.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510		.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		A	Y	V	Y	L	F	Q	K	N	Y	Q	L	A	M	N	K	E	V	K	G	F	V	F	N	P	M	L	E	Q	V	F	N	.	I	N	T	M	S	K
Query Conservation																																		.
Alig confidence																																		.
Template Conservation
Template Sequence		P	I	A	P	I	Y	Q	Y	T	N	G	R	L	I	K	P	W	L	K	G	Y	P	I	N	N	P	E	D	V	A	Y	S	R	T	M	Y	I	V	K
Template Known Secondary structure		S													B		T	T						T	T		T	T					G	G	G				B
Template Predicted Secondary structure
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.