Job Description P76128 Confidence 100.00% Date Thu Jan 5 12:19:19 GMT 2012 Rank 16 Aligned Residues 486 % Identity 22% Template c3ftoA_ PDB info PDB header:peptide binding protein Chain: A: PDB Molecule:oligopeptide-binding protein oppa; PDBTitle: crystal structure of oppa in a open conformation Resolution 2.38 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		N	F	P	V	A	H	A	A	V	P	K	D	M	L	V	I	G	K	A	A	D	P	Q	T	L	D	P	A	V	T	I	D	N	N	D	W	T	V	T	Y	.	.	.	.	.	P	S	Y	Q	R	L	V	Q	Y	K	T	D	G	D	K	G	S	T	D	V	E	G	D	L	A	S	S	W	K	A	S	D	D	Q	K
Query Conservation																																										.	.	.	.	.
Alig confidence																																										.	.	.	.	.														.	.	.	.	.
Template Conservation																																																												.	.	.	.	.
Template Sequence		A	Y	Q	N	P	D	K	A	I	K	G	G	N	L	K	V	A	Y	Q	S	D	S	P	X	K	A	Q	W	L	S	G	L	S	N	D	A	T	F	A	T	X	S	G	P	G	G	G	Q	D	G	L	F	F	T	D	S	G	F	.	.	.	.	.	K	F	I	K	G	G	A	A	D	V	A	L	D	K	E	S	K
Template Known Secondary structure		B				S	S				S	S										S	S							S	T	T	T										T	G	G	G	T	T	T	T	B						T	T	S	.	.	.	.	.	B			S		S	S							T	T	T	T
Template Predicted Secondary structure																																																												.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.						80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.																		.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query Sequence		E	W	T	F	T	L	K	D	N	A	K	F	A	D	G	T	P	V	T	A	E	A	V	K	L	S	F	E	R	L	L	K	I	G	Q	G	P	A	E	A	F	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	K	I	D	A	P	D	E	.	.	.	H	T	V	K	F	T	L	S
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation
Template Sequence		T	A	T	I	T	L	R	K	D	L	K	W	S	D	G	S	E	V	T	A	K	D	Y	E	F	T	Y	E	T	I	A	N	P	A	Y	G	S	D	R	W	T	D	S	L	A	N	I	V	G	L	S	D	Y	H	T	G	K	A	K	T	I	S	G	I	T	F	P	D	G	E	N	G	K	V	I	K	V	Q	F	K
Template Known Secondary structure									T	T		B		T	T	S		B																G	G	G			S				G	G	G	G	G	B	T	T						T	T	S		S	S		T	T				T	T		T	T	S	S						B	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		Q	P	F	A	P	F	L	Y	T	L	A	N	D	G	A	S	I	I	N	P	A	V	L	K	E	.	.	.	H	A	A	D	D	A	R	G	F	L	A	Q	N	T	A	G	S	G	P	F	M	L	K	S	W	Q	K	G	Q	Q	L	V	L	V	P	N	P	H	Y	P	G	N	K	P	N	F	K	R	V	S	V	K
Query Conservation																											.	.	.
Alig confidence																											.	.	.
Template Conservation
Template Sequence		E	X	K	P	G	X	T	Q	S	G	N	G	Y	F	L	E	T	V	A	P	Y	Q	Y	L	K	D	V	A	P	K	D	L	A	S	S	P	K	T	T	T	K	P	L	V	T	G	P	F	K	P	E	N	V	V	A	G	E	S	I	K	Y	V	P	N	P	Y	Y	W	G	E	K	P	K	L	N	S	I	T	Y	E
Template Known Secondary structure		S			G	G	G	G	B	T	T		S	S	S			B								T	T	S		G	G	G	T	T	T	S	G	G	G	T	T	S					S	S								T	T	T								T	T		S	S				S		S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.														.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	G	E	S	A	S	R	R	L	Q	L	S	R	G	D	I	D	I	A	D	A	L	P	V	D	Q	L	N	A	L	K	Q	E	N	K	V	N	V	A	E	Y	P	S	L	R	V	T	Y	L	Y	L	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	A	P	L	N	Q	A	D	L	R	R	A
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.
Template Sequence		V	V	S	T	.	A	K	S	V	A	A	L	S	S	S	K	Y	D	I	I	N	G	X	V	S	S	Q	Y	K	Q	V	K	N	L	K	G	Y	K	V	L	G	Q	Q	A	X	Y	I	S	L	X	Y	Y	N	L	G	H	Y	D	A	K	N	S	I	N	V	Q	D	R	K	T	P	L	Q	D	Q	N	V	R	Q	A
Template Known Secondary structure						.									T	T			S							G	G	G						T		T	T									S														T	T	T	T									G	G	G	S
Template Predicted Secondary structure						.
Template SS confidence
		257	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.			.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.														.	.	.	.	.	360	.	.
Predicted Secondary structure																																									.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	W	S	T	D	Y	Q	G	M	V	N	G	I	L	S	G	N	G	K	Q	M	R	G	P	I	P	E	G	M	W	G	Y	D	A	T	A	M	Q	.	.	Y	N	H	D	E	T	K	A	K	A	E	W	D	K	V	T	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	S	L	T	F	L	Y
Query Conservation																																									.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	G	Y	A	R	N	V	A	E	V	D	N	K	F	S	N	G	L	S	T	P	A	N	S	L	I	P	P	I	F	K	Q	F	T	S	S	S	V	K	G	Y	E	K	Q	D	L	D	K	A	N	K	L	L	D	E	D	G	W	K	L	N	K	S	T	G	Y	R	E	K	D	G	K	E	L	S	L	V	Y	A	A
Template Known Secondary structure																T	T	T	S					S	S	S	S		T	T	S	T	T	S			T	T				S	S	S												T	T	T					S	S	S	S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.								.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.
Query Sequence		S	D	N	D	P	N	W	E	P	I	A	L	A	T	Q	S	S	L	N	K	L	G	I	I	V	K	L	E	K	L	A	N	A	T	M	R	D	R	V	.	.	.	.	.	.	.	G	K	G	D	Y	D	I	A	I	G	N	W	S	P	D	F	A	D	P	Y	M	F	M	N	Y	W	F	E	S	D	K	K	G	L
Query Conservation																																									.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.
Template Sequence		R	V	G	D	A	N	A	E	T	I	A	Q	N	Y	I	Q	Q	W	K	K	I	G	V	K	V	S	L	Y	N	G	K	L	X	E	F	N	S	W	V	D	H	X	T	T	P	P	G	A	N	D	W	D	I	T	D	G	S	W	S	L	A	S	E	P	S	Q	Q	D	L	F	.	.	.	.	.	.	S	A	A	A
Template Known Secondary structure		B	S		S	T	T															T	T						G	G	G	S		B											S	T	T			S	S		S										S	S								.	.	.	.	.	.	S	T	T
Template Predicted Secondary structure																																																																								.	.	.	.	.	.
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.							.	.	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.			.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		P	G	N	R	S	F	Y	E	N	S	E	V	D	K	L	L	R	N	A	L	A	.	.	T	T	D	Q	T	Q	R	T	R	D	Y	Q	Q	A	Q	K	I	V	I	D	D	A	A	Y	V	Y	L	F	Q	K	N	Y	Q	L	A	M	N	K	E	V	K	G	F	V	F	N	P	M	L	E	Q	V	F	N	I	N	T
Query Conservation																							.	.
Alig confidence																							.	.
Template Conservation
Template Sequence		P	Y	N	F	G	H	F	N	D	S	E	I	T	K	D	L	N	D	I	D	S	A	K	S	E	N	P	T	Y	R	K	A	A	F	V	K	Y	Q	E	D	X	N	K	K	A	Y	V	I	P	T	N	F	X	L	N	Y	T	P	V	N	K	R	V	V	G	X	T	L	D	Y	G	A	X	N	T	W	S	E	I	G
Template Known Secondary structure		T	T		T	T															T	S	G	G	G	G	S																				S															T	T			S		B			T	T		S
Template Predicted Secondary structure
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
		514	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	S
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		570	.	.