Job Description P76128 Confidence 100.00% Date Thu Jan 5 12:19:19 GMT 2012 Rank 12 Aligned Residues 482 % Identity 15% Template c2grvC_ PDB info PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw Resolution 2.40 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.				.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																									.	.																											.	.	.													.
Query SS confidence																									.	.																											.	.	.													.
Query Sequence		P	K	D	M	L	V	I	G	K	A	A	D	P	Q	T	L	D	P	A	V	T	I	D	.	.	N	N	D	W	T	V	T	Y	P	S	Y	Q	R	L	V	Q	Y	K	T	D	G	D	K	G	S	T	.	.	.	D	V	E	G	D	L	A	S	S	W	K	A	.	S	D	D	Q	K	E	W	T	F	T	L	K	D
Query Conservation																									.	.																											.	.	.													.
Alig confidence																									.	.																											.	.	.													.
Template Conservation
Template Sequence		A	P	T	Q	I	I	M	A	I	D	S	I	G	P	G	F	N	P	H	L	L	S	D	Q	S	P	V	N	A	A	I	A	S	L	V	L	P	S	S	F	R	P	V	P	D	P	T	S	P	T	G	S	R	W	E	L	D	T	T	L	L	E	S	A	E	V	T	Q	E	N	P	F	T	V	T	Y	K	I	R	P
Template Known Secondary structure											S				S		S		T	T	B	G	G	G		S											S			S							T	T	S	T	T	S							T	T	T									T	T	T	T								T
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.																			.
Query SS confidence																										.																			.
Query Sequence		N	A	K	F	A	D	G	T	P	V	T	A	E	A	V	K	L	S	F	E	R	L	L	K	.	I	G	Q	G	P	A	E	A	F	P	K	D	L	K	I	D	A	P	.	D	E	H	T	V	K	F	T	L	S	Q	P	F	A	P	F	L	Y	T	L	A	N	D	G	A	S	I	I	N	P	A	V	L	K	E	H
Query Conservation																										.																			.
Alig confidence																										.																			.																							.	.	.	.
Template Conservation																																																																				.	.	.	.
Template Sequence		E	A	Q	W	T	D	N	A	P	I	A	A	D	D	Y	W	Y	L	W	R	Q	M	V	S	Q	P	G	V	V	D	P	A	G	Y	D	L	I	T	G	V	Q	S	V	E	G	G	K	Q	A	V	V	T	F	S	Q	P	Y	P	A	W	R	E	L	F	N	D	.	.	.	.	I	L	P	A	H	I	V	K	D	I
Template Known Secondary structure		T		B		T	T	S		B																	T	T	B	S			T	T	G	G	G								T	T	T	T							S	S			T	T	G	G	G	S	S		S	.	.	.	.								T	T	S
Template Predicted Secondary structure																																																																				.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.
Predicted Secondary structure																													.																																														.
Query SS confidence																													.																																														.
Query Sequence		A	A	D	D	A	R	G	F	L	A	Q	N	T	A	G	S	G	P	F	M	L	K	S	W	Q	K	G	.	Q	Q	L	V	L	V	P	N	P	H	Y	P	G	N	K	P	N	F	K	R	V	S	V	K	I	I	G	E	S	A	S	R	R	L	Q	L	S	R	G	D	I	D	I	A	D	.	A	L	P	V	D	Q
Query Conservation																													.																																														.
Alig confidence																													.																																														.
Template Conservation
Template Sequence		P	G	G	F	G	A	G	L	A	R	A	M	P	V	T	G	G	Q	F	R	V	E	T	I	D	P	Q	R	D	E	I	L	L	A	R	N	D	R	F	W	S	V	P	A	K	P	D	L	V	L	F	R	R	G	G	A	P	A	A	L	A	D	S	I	R	N	G	D	T	Q	V	A	Q	V	H	G	G	A	A	T
Template Known Secondary structure		T	T					T	T	S	S				S			S	S								T	T	T	T								T	T		S	S	S			S		S									S											T	S
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.				.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																													.	.	.
Query SS confidence																																																													.	.	.
Query Sequence		L	N	A	L	K	Q	E	N	K	V	N	V	A	E	Y	P	S	L	R	V	T	Y	L	Y	L	N	N	S	K	A	P	L	N	Q	A	D	L	R	R	A	I	S	W	S	T	D	Y	Q	G	M	V	N	G	I	L	S	G	N	G	.	.	.	K	Q	M	R	G	P	I	P	E	G	M	W	G	Y	D	A	T	A
Query Conservation																																																													.	.	.
Alig confidence																																																													.	.	.
Template Conservation
Template Sequence		F	A	Q	L	S	A	I	P	D	V	R	T	A	R	I	V	T	P	R	V	M	Q	L	T	L	R	A	Q	Q	P	K	L	A	D	P	Q	V	R	K	A	I	L	G	L	I	D	V	D	L	L	A	S	V	G	A	G	D	D	N	T	V	T	L	A	Q	A	Q	V	R	S	P	S	D	P	G	Y	V	P	T	A
Template Known Secondary structure							T	S	T	T																		T	T	S	G	G	G		S											S												S	S	S								S	S	S		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.														.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	Q	Y	N	H	D	E	T	K	A	K	A	E	W	D	K	V	T	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	S	L	T	F	L	Y	S	D	N	D	P	N	W	E	P	I	A	L	A	T	Q	S	S	L	N	K	L	G	I	I	V	K	L	E	K	L	A	N	A	T	M	R	D	R	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.
Template Sequence		P	.	P	A	M	T	R	D	D	A	L	E	L	L	R	D	A	G	Y	V	S	E	P	V	R	E	R	I	V	K	D	G	V	P	L	T	I	V	L	G	V	A	S	N	D	P	T	S	V	A	V	A	N	T	A	A	D	Q	L	R	N	V	G	I	D	A	S	V	L	A	L	D	P	V	A	L	Y	G	D	A
Template Known Secondary structure			.															T	T													T	T											T	T																		T	T																T	T
Template Predicted Secondary structure			.
Template SS confidence
		341		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	G	D	Y	D	I	A	I	G	N	W	S	P	D	F	A	D	P	Y	M	F	M	N	Y	W	F	E	S	D	K	K	G	L	P	G	N	R	S	F	Y	E	N	S	E	V	D	K	L	L	R	N	A	L	A	T	T	D	Q	T	Q	R	T	R	D	Y	Q	Q	A	Q	K	I	V	I	D	D	A	A	Y	V
Query Conservation
Alig confidence																																																												.	.
Template Conservation																																																												.	.
Template Sequence		L	V	N	N	R	V	D	A	V	V	G	W	R	Q	A	G	G	D	L	A	T	V	L	A	S	R	Y	G	C	R	A	L	Q	A	P	S	N	I	T	G	I	C	D	R	S	I	Q	P	R	I	D	A	A	L	D	G	T	D	.	.	D	I	A	D	V	I	Q	A	V	E	P	R	L	W	N	M	A	T	V	L
Template Known Secondary structure		T	T	T	T			S									S	S												S	T	T					S		T	T	S				G	G	G									T	T	S	S	.	.																T
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.			.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.			.	.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		Y	L	F	Q	K	N	Y	Q	L	A	M	N	K	E	V	K	G	F	V	F	N	P	.	.	M	L	E	Q	V	F	N	I	N	T	M	S	K
Query Conservation																								.	.
Alig confidence																								.	.
Template Conservation
Template Sequence		P	I	L	Q	D	T	T	I	V	A	A	G	P	S	V	Q	N	V	S	L	T	G	A	V	P	V	G	I	V	G	D	A	G	D	W	T	K
Template Known Secondary structure														T	T			S			S				T	T	T		S		T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.