Job Description P0AE18 Confidence 100.00% Date Thu Jan 5 11:22:16 GMT 2012 Rank 20 Aligned Residues 244 % Identity 14% Template c3cb5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:fact complex subunit spt16; PDBTitle: crystal structure of the s. pombe peptidase homology domain of fact2 complex subunit spt16 (form a) Resolution 2.05 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.								.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.										.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Query Sequence		I	S	I	K	T	P	E	D	I	E	K	M	R	V	A	G	R	L	A	A	E	V	L	E	M	I	E	P	Y	V	K	P	G	.	.	.	.	.	.	.	V	S	T	G	E	L	D	R	I	C	N	D	Y	I	V	N	E	Q	H	A	.	.	.	.	.	.	.	.	.	V	S	A	C	L	G	Y	H	G	Y	P
Query Conservation																																			.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	I	K	D	E	Q	E	L	A	N	I	K	G	A	S	R	V	S	V	A	V	X	S	K	Y	F	V	D	E	L	S	T	Y	I	D	Q	G	K	K	I	T	H	S	K	F	S	D	Q	X	E	S	L	I	D	N	E	A	F	F	Q	T	K	S	L	K	L	G	D	I	D	L	D	Q	L	E	W	C	Y	T
Template Known Secondary structure				S																																		T	T				B											G	G	G		T	T	G	G	G		S	S	S			T	T			G	G	G				S	S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	V	C	I	S	I	N	E	V	V	C	H	G	I	P	D	D	A	K	L	L	K	D	G	D	I	V	N	I	D	V	T	V	I	K	D	G	F	H	G	D	T	S	K	M	F	I	V	G	K	P	T	I	M	G	E	R	L	C	R	I	T	Q	E	S	L	Y	L	A	L	R	M	V	K	P	G	I	N	L
Query Conservation
Alig confidence																					.																															.
Template Conservation																					.																															.
Template Sequence		P	I	I	Q	S	G	G	S	Y	D	L	K	P	S	A	I	T	D	D	.	R	N	L	H	G	D	V	V	L	C	S	L	G	F	R	Y	K	S	Y	C	S	N	V	G	R	T	Y	L	F	D	.	P	D	S	E	Q	Q	K	N	Y	S	F	L	V	A	L	Q	K	K	L	F	E	Y	C	R	D	G	A	V	I
Template Known Secondary structure						B	T	T	B				S	T	T					S	.	S	B			S	S											T	T												S	.																									T	T		B
Template Predicted Secondary structure																					.																															.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																	.	.		.
Query SS confidence																	.	.		.
Query Sequence		R	E	I	G	A	A	I	Q	K	F	V	E	A	E	G	.	.	F	.	S	V	V	R	E	Y	C	G	H	G	I	G	R	G	F	H	E	E	P	Q	V	L	H	Y	D	S	R	E	T	N	V	V	L	K	P	G	M	T	F	T	I	E	P	M	V	N	A	G	K	K	E	I	R	T	M	K	D	G	W	T	V
Query Conservation																	.	.		.
Alig confidence																	.	.		.																							.	.	.																							.	.	.	.	.	.	.
Template Conservation																																											.	.	.																							.	.	.	.	.	.	.
Template Sequence		G	D	I	Y	T	K	I	L	G	L	I	R	A	K	R	P	D	L	E	P	N	F	V	R	N	L	G	A	G	I	G	I	E	F	R	E	S	S	L	L	V	.	.	.	N	A	K	N	P	R	V	L	Q	A	G	X	T	L	N	L	S	I	G	F	G	N	.	.	.	.	.	.	.	L	I	N	P	H	P	K
Template Known Secondary structure																	G	G	G	G	G	G	B		S							S	S	S	S		B	G	G	G			.	.	.	S	T	T				B			T	T												.	.	.	.	.	.	.				S	S
Template Predicted Secondary structure																																											.	.	.																							.	.	.	.	.	.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.				.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.								.	.	.	.	.	.	400
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	K	D	R	S	L	S	A	Q	Y	E	H	T	I	V	V	T	D	N	G	C	E	I	L	T	L	R	K	D	D	T	I	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	Q	S	K	E	Y	A	L	L	L	I	D	T	I	Q	I	T	R	S	D	P	I	V	F	T	D	S	P	K	A	Q	G	D	I
Template Known Secondary structure		T	T	S		S														S	S	S				T	T					S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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