Job Description P0AE18 Confidence 100.00% Date Thu Jan 5 11:22:16 GMT 2012 Rank 28 Aligned Residues 243 % Identity 11% Template c3bitA_ PDB info PDB header:transcription Chain: A: PDB Molecule:fact complex subunit spt16; PDBTitle: crystal structure of yeast spt16 n-terminal domain Resolution 1.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.																				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Query Sequence		I	S	I	K	T	P	E	D	I	E	K	M	R	V	A	G	R	L	A	A	E	V	L	E	M	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	V	K	P	G	V	S	T	G	E	L	D	R	I	C	N	D	Y	I	V	N	E	Q	H	A	.	.	.	V	S	A	C	L
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Conservation
Template Sequence		W	E	V	K	D	V	N	E	Q	A	F	L	S	V	S	S	K	G	S	D	K	F	X	D	L	L	S	N	E	X	V	R	A	V	D	E	E	L	K	I	T	N	A	K	L	S	D	K	I	E	N	K	I	D	D	V	K	F	L	K	Q	L	S	P	D	L	S	A	L	C	P	P	N	Y	K	F	N	F	D	L
Template Known Secondary structure		S		S																																	T	T				B											G	G	G														T	T	S		T	T	S				G	G	G
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	H	G	Y	P	K	S	V	C	I	S	I	N	E	V	V	C	H	G	I	P	D	D	A	K	L	L	K	D	G	D	I	V	N	I	D	V	T	V	I	K	D	G	F	H	G	D	T	S	K	M	F	I	V	G	K	P	T	I	M	G	E	R	L	C	R	I	T	Q	E	S	L	Y	L	A	L	R	M	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	W	T	Y	S	P	I	I	Q	S	G	K	K	F	D	L	R	V	S	A	R	S	T	N	D	Q	L	Y	G	N	G	C	I	L	A	S	C	G	I	R	Y	N	N	Y	C	S	N	I	T	R	T	F	L	I	D	P	S	E	E	X	A	N	N	Y	D	F	L	L	T	L	Q	K	E	I	V	T	N	I	L
Template Known Secondary structure					S	S							S	S					S	T	T					S	S	B				S												T	T												S																							T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		K	P	G	I	N	L	R	E	I	G	A	A	I	Q	K	F	V	E	A	E	G	F	.	.	.	S	V	V	R	E	Y	C	G	H	G	I	G	R	G	F	H	E	E	P	Q	V	L	H	Y	D	S	R	E	T	N	V	V	L	K	P	G	M	T	F	T	I	E	P	M	V	N	A	G	K	K	E	I	R	T	M
Query Conservation																								.	.	.
Alig confidence																								.	.	.																								.	.																							.	.	.	.	.	.	.	.
Template Conservation																																																		.	.																							.	.	.	.	.	.	.	.
Template Sequence		K	P	G	R	T	P	K	E	V	Y	E	S	V	I	E	Y	I	E	K	T	K	P	E	L	V	P	N	F	T	K	N	I	G	S	L	I	G	L	E	F	R	D	S	N	F	I	L	N	.	.	V	K	N	D	Y	R	K	I	Q	R	G	D	C	F	N	I	S	F	G	F	N	N	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T																			G	G	G	G	G	G	B		S							S	S	S	S	S		T	T	S	B	S	S	.	.	T	T			S					T	T												.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.																							.	.	.	.	.	.	.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380			.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.				.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.
Query SS confidence																												.	.	.
Query Sequence		K	D	G	W	T	V	K	T	K	D	R	S	L	S	A	Q	Y	E	H	T	I	V	V	T	D	N	.	.	.	G	C	E	I	L	T	L	R	K	D	D	T	I	P	A
Query Conservation																												.	.	.
Alig confidence		.	.	.																								.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	L	K	D	S	Q	S	A	N	N	Y	A	L	Q	L	A	D	T	V	Q	I	P	L	D	E	T	E	P	P	R	F	L	T	N	Y	T	K	A	K	S	Q	I
Template Known Secondary structure		.	.	.				T	T	T																S	S	T	T	S					S			S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions