|   |
36 | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | D | E | L | Q | D | L | P | Y | R | Q | V | G | V | V | L | G | T | A | K | Y | Y | R | T | G | V | I | N | Q | Y | Y | R | Y | R | I | Q | G | A | I | N | A | Y | N | S | G | K | V | N | Y | L | L | L | S | G | D | N | A | L | Q | S | Y | N | E | P | M | T | M | R | K | D | L | I | A | A | G | V | D | P | S | D |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |   |
|   |
|
|
|
|
|   |
|   |   |   |   |   |
|   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |
|
|
|   |
|   |   |   |   |
|
|   |
|
|
|   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |
|   |   |   |
|
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|   |   |   |   |   |
|   |   |
|
|
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |   |
|   |   |
|   |   |   |   |
|
|
|   |   |   |   |   |   |
|   |
|   |   |   |
|   | . | . |   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |
Template Sequence |   |
I | E | D | L | K | D | T | G | N | S | D | L | T | L | S | L | G | S | Y | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | D | L | G | A | K | T | L | E | K | K | C | K | V | P | F | K | T | L | R | T | P | I | G | V | S | A | T | D | . |
. |
E | F | I | M | A | L | S | E | A | T | G | K | E | V | P | A |
Template Known Secondary structure |   |
 |  |  |  |  | T | T | S | S |
| S |  |  |  |  |  | S |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | S |
|
|
|  |  |  |  |
|
|
| B |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
226 | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | |
|
. | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 |
  |
  |   |
116 | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | V | L | D | Y | A | G | F | R | T | L | D | S | I | V | R | T | R | K | V | F | D | T | N | D | F | I | I | I | T | Q | R | F | H | C | E | R | A | L | F | I | A | L | H | M | G | I | Q | A | Q | C | Y | A | V | P | S | P | K | D | M | L | S | V | R | I | R | E | F | A | A |
Query Conservation |   |
|   |
|
|   |   |
|   |   |
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |
|
|
|
|
|
|   |
|
|
|   |
|
|   |   |
|
|
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|
|   | . |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |
|
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
S | I | E | E | E | R | G | . |
Q | L | I | D | L | M | I | D | A | Q | Q | Y | L | Q | G | K | K | V | A | L | L | G | D | P | D | E | I | I | A | L | S | K | F | I | I | E | L | G | A | I | P | K | Y | V | V | T | G | T | P | G | M | K | F | Q | K | E | I | D | A | M | L | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  | T |  |  |  |  | T | T |
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |  |  | S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
291 | . | . | . | . | . | . | |
. | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . |
  |