Job Description P0AFY2 Confidence 76.40% Date Thu Jan 5 11:27:33 GMT 2012 Rank 18 Aligned Residues 112 % Identity 13% Template c3qi7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution Resolution 1.86 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	Q	D	L	P	Y	R	Q	V	G	V	V	L	G	T	A	K	Y	Y	R	T	G	V	I	N	Q	Y	Y	R	Y	R	I	Q	G	A	I	N	A	Y	N	S	G	K	V	N	Y	L	L	L	S	G	D	N	A	L	Q	S	Y	N	E	P	M	T	M	R	K	D	L	I	A	A	G	V	D	P	S	D	I	V
Query Conservation
Alig confidence																		.	.	.				.	.	.	.	.	.	.	.	.	.																								.	.	.	.										.	.	.	.	.	.	.	.
Template Conservation																		.	.	.				.	.	.	.	.	.	.	.	.	.																								.	.	.	.										.	.	.	.	.	.	.	.
Template Sequence		K	L	A	D	D	K	E	V	Q	A	I	V	V	S	T	D	.	.	.	Q	A	G	.	.	.	.	.	.	.	.	.	.	L	L	P	A	L	Q	K	V	K	E	K	R	P	E	I	I	T	I	S	A	P	X	G	.	.	.	.	D	D	K	N	Q	L	S	Q	F	.	.	.	.	.	.	.	.	V	D	V	N
Template Known Secondary structure		G	G	G	G		T	T									S	.	.	.	S			.	.	.	.	.	.	.	.	.	.													T	T	S					S	S			.	.	.	.	S									.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																		.	.	.				.	.	.	.	.	.	.	.	.	.																								.	.	.	.										.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.											.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.									.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150								.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.						.	.
Query SS confidence																																			.	.	.	.	.	.	.						.	.
Query Sequence		L	D	Y	A	G	F	R	T	L	D	S	I	V	R	T	R	K	V	F	D	T	N	D	F	I	I	I	T	Q	R	F	H	C	.	.	.	.	.	.	.	E	R	A	L	F	.	.	I	A	L	H	M	G	I	Q	A	Q	C	Y	A	V	P	S	P	K	D
Query Conservation																																			.	.	.	.	.	.	.						.	.
Alig confidence																																			.	.	.	.	.	.	.						.	.
Template Conservation
Template Sequence		L	G	V	S	A	E	E	R	G	K	V	L	A	E	R	S	K	E	X	G	A	K	A	F	I	H	Y	A	S	T	D	D	L	K	D	V	N	I	A	K	R	L	E	X	I	K	E	T	C	K	N	I	G	L	P	F	V	Q	V	N	T	P	N	I	N	T
Template Known Secondary structure																				T	T		S								T	T	G	G	G	S																	T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions