Job Description P65556 Confidence 96.43% Date Thu Jan 5 12:10:16 GMT 2012 Rank 83 Aligned Residues 77 % Identity 21% Template c3p5tE_ PDB info PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex Resolution 2.70 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.
Predicted Secondary structure																									.	.																																															.	.
Query SS confidence																									.	.																																															.	.
Query Sequence		R	E	Q	M	R	A	Q	C	L	R	H	R	A	T	Y	I	V	V	H	D	G	M	G	.	.	K	I	L	V	Q	R	R	T	E	T	K	D	F	L	P	G	M	L	D	A	T	A	G	G	V	V	Q	A	D	E	Q	L	L	E	S	A	R	R	E	A	E	E	E	L	G	I	.	.	A	G	V	P	F	A	E
Query Conservation																									.	.																																															.	.
Alig confidence																									.	.												.	.	.	.	.	.				.																										.	.
Template Conservation																																						.	.	.	.	.	.				.
Template Sequence		R	E	E	F	D	K	I	G	M	R	R	T	V	E	G	V	L	I	V	H	E	H	R	L	P	H	V	L	L	L	Q	L	G	T	T	F	.	.	.	.	.	.	F	K	L	.	P	G	G	E	L	N	P	G	E	D	E	V	E	G	L	K	R	L	M	T	E	I	L	G	V	L	Q	D	W	V	I	D	D	C
Template Known Secondary structure								S		S													T	T										T	T	T		.	.	.	.	.	.				.	S						T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.				.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.							.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		103	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	Q	F	Y	F	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	N	W	W	R	P	N
Template Known Secondary structure									S
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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