Job Description P08957 Confidence 99.48% Date Thu Jan 5 11:01:44 GMT 2012 Rank 21 Aligned Residues 183 % Identity 13% Template c3uzuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a; PDBTitle: the structure of the ribosomal rna small subunit methyltransferase a2 from burkholderia pseudomallei Resolution 1.75 Å

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		144	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		S	G	A	G	Q	.	Y	F	T	P	R	P	L	I	K	T	I	I	H	L	L	K	P	Q	P	R	E	V	V	Q	D	P	A	A	G	T	A	G	F	L	I	E	A	D	R	Y	V	K	S	Q	T	N	D	L	D	D	L	D	G	D	T	Q	D	F	Q	I	H	R	A	F	I	G	L	E	L	V	P	G	T	R
Query Conservation							.
Alig confidence							.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	R	F	G	Q	N	F	L	V	D	H	G	V	I	D	A	I	V	A	A	I	R	P	E	R	G	E	R	M	V	E	I	G	P	G	L	G	A	L	T	G	P	V	I	A	R	L	A	T	P	G	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	H	A	V	E	L	D	R	D	L	I
Template Known Secondary structure					S																					T	T									T	T	S	T	T										B	T	T	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.																	.	.	.	70	.	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	A	L	M	N	C	L	L	H	D	I	E	G	N	L	D	H	G	G	A	I	R	L	G	N	T	L	G	S	D	G	E	N	L	P	K	A	H	I	V	A	T	N	P	P	F	G	S	A	A	G	T	N	I	T	R	T	F	V	H	P	T	S	N	K	Q	L	C	F	M	Q	H	I	I	E	T	L	H	P
Query Conservation
Alig confidence									.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	R	L	E	Q	R	F	.	.	.	.	G	E	L	L	E	L	H	A	G	D	A	L	T	F	D	F	G	S	I	A	R	P	G	D	E	P	S	L	R	I	I	G	N	L	P	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	S	P	L	L	F	H	L	M	S	F	A	P	V
Template Known Secondary structure									.	.	.	.	G	G	G						S		G	G	G			G	G	G	G	S		S	S	S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										G	G	G	G	G	G
Template Predicted Secondary structure									.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.					.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.																		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.							.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.																																.
Query SS confidence																	.	.	.	.	.	.																																.
Query Sequence		G	G	R	A	A	V	V	V	P	D	N	V	L	F	E	.	.	.	.	.	.	G	G	K	G	T	D	I	R	R	D	L	M	D	K	C	H	L	H	T	I	L	R	L	P	T	G	I	F	Y	A	Q	.	G	V	K	T	N	V	L	F	F	T	K	G	T	V	A
Query Conservation																	.	.	.	.	.	.																																.
Alig confidence																	.	.	.	.	.	.																																.
Template Conservation
Template Sequence		V	I	D	Q	H	F	M	L	Q	N	E	V	V	E	R	M	V	A	E	P	G	T	K	A	F	S	R	L	S	V	M	L	Q	Y	R	Y	V	M	D	K	L	I	D	V	P	P	E	S	F	Q	P	P	P	K	V	D	S	A	I	V	R	M	I	P	H	A	P	H
Template Known Secondary structure																		T			T	T	S	T	T																						G	G	G			S			S	S												G	G
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions