Job Description P08957 Confidence 100.00% Date Thu Jan 5 11:01:44 GMT 2012 Rank 6 Aligned Residues 331 % Identity 18% Template c3s1sA_ PDB info PDB header:hydrolase, transferase Chain: A: PDB Molecule:restriction endonuclease bpusi; PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi Resolution 2.35 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		N	D	L	V	A	K	L	W	K	L	C	D	N	L	R	D	G	G	V	S	Y	Q	N	Y	V	N	E	L	A	S	L	L	F	L	K	M	C	K	E	T	G	Q	E	A	E	Y	L	P	E	G	Y	R	W	D	D	L	K	S	R	I	G	Q	E	Q	L	Q	F	Y	R	K	M	L	V	H	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																			.	.	.																									.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation																			.	.	.																									.	.	.	.	.	.	.
Template Sequence		N	R	L	V	E	A	F	Q	N	I	I	D	I	S	V	N	D	.	.	.	A	G	T	Y	K	S	S	T	A	N	L	V	D	I	L	E	N	R	K	D	N	S	T	S	.	.	.	.	.	.	.	W	H	Q	A	L	V	V	A	G	Y	E	Y	I	R	G	V	L	R	G	Q	N	V	E	V	P	T	R	D	A
Template Known Secondary structure																	T	T	.	.	.				B													T	T	T	T					.	.	.	.	.	.	.																			T	T	T					S	S		G
Template Predicted Secondary structure																			.	.	.																									.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.								.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
			78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.									.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																						.	.	.	.	.	.	.	.
Query SS confidence		.																						.	.	.	.	.	.	.	.
Query Sequence		.	L	G	E	D	D	K	K	L	V	Q	A	V	F	H	N	V	S	T	T	I	T	.	.	.	.	.	.	.	.	E	P	K	Q	I	T	A	L	V	S	N	M	D	S	L	D	W	Y	N	G	A	H	G	K	S	R	D	D	F	G	D	M	Y	E	G	L	L	Q	K	N	A	N	E	T	K	S	G	A	G	Q
Query Conservation		.																						.	.	.	.	.	.	.	.
Alig confidence		.																						.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.
Template Sequence		I	Y	F	K	S	R	P	G	R	L	L	E	E	G	R	K	I	D	F	N	V	L	F	S	E	P	E	P	N	T	N	D	N	D	I	W	N	V	N	L	L	S	S	L	N	D	L	G	R	.	.	.	.	.	.	R	I	L	T	G	D	E	L	A	E	L	I	H	D	I	A	T	R	G	R	G	H	E	G	V
Template Known Secondary structure		G	G	G	S	S											T	T	S		T	T	T	S		S	S				T	T		T	T	T															.	.	.	.	.	.				S	S												T	T	S					B	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.							.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																						.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.
Query Sequence		Y	F	T	P	R	P	L	I	K	T	I	I	H	L	L	K	P	Q	P	R	.	.	.	.	.	.	E	V	V	Q	D	P	A	A	G	T	A	G	F	L	I	E	A	D	R	Y	V	K	S	Q	T	N	D	L	D	D	L	D	G	D	T	Q	D	F	Q	I	H	R	A	F	I	G	L	E	L	V	P	G	T	R
Query Conservation																						.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	T	D	I	E	L	G	K	V	L	S	I	I	S	Q	H	I	L	G	R	P	L	T	E	D	E	V	I	S	D	P	A	A	G	S	G	N	L	L	A	T	V	S	A	G	F	N	N	V	X	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	W	A	N	D	I	E	T	L	F	L
Template Known Secondary structure		S	S																			S				T	T						T	T		T	T	S									T	S	T	T			G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G						S		G	G	G
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.																350	.	.	.	.	.	.	.	.	.	360	.
		223	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.																.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure											.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	A	L	M	N	C	L	L	.	H	D	I	E	G	N	L	D	H	G	G	A	I	R	L	G	N	T	L	G	S	D	G	E	N	L	P	K	A	H	I	V	A	T	N	P	P	F	G	S	A	A	G	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	R	T	F	V	H	P	T	S
Query Conservation											.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	L	S	I	R	L	G	L	L	F	P	Q	L	V	S	S	N	N	A	P	T	I	T	G	E	D	V	C	S	L	N	P	E	D	F	A	N	V	S	V	V	V	X	N	P	P	Y	V	S	G	V	T	D	P	A	I	K	R	K	F	A	H	K	I	I	Q	L	T	G	N	R	P	Q	T	L	F	G	Q	I
Template Known Secondary structure										T	T	S	T	T	T		B	T	T	B									G	G	G			G	G	G	G	T	T									B			S	S																			S	S			S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																.																										.
Query SS confidence																																.																										.
Query Sequence		N	K	Q	L	C	F	M	Q	H	I	I	E	T	L	H	P	G	G	R	A	A	V	V	V	P	D	N	V	L	F	.	E	G	G	K	G	T	D	I	R	R	D	L	M	D	K	C	H	L	H	T	I	L	R	L	P	.	T	G	I	F	Y	A	Q	G	V	K	T	N	V	L	F	F	T	K	G	T	V	A	N
Query Conservation																																.																										.
Alig confidence																																.																										.
Template Conservation
Template Sequence		G	V	E	A	L	F	L	E	L	V	T	E	L	V	Q	D	G	T	V	I	S	A	I	X	P	K	Q	Y	L	T	A	Q	G	N	E	S	K	A	F	R	E	F	L	V	G	N	F	G	L	E	H	I	F	L	Y	P	R	E	G	L	F	E	E	V	I	K	D	T	V	V	F	V	G	R	K	G	S	S	V	E
Template Known Secondary structure															S		T	T									T							S											T	T	T	T										B			S	S		S		B										T	T				S
Template Predicted Secondary structure
Template SS confidence
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
		365
Predicted Secondary structure
Query SS confidence
Query Sequence		P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		522

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions