Job Description P08957 Confidence 100.00% Date Thu Jan 5 11:01:44 GMT 2012 Rank 3 Aligned Residues 401 % Identity 25% Template c3lkdB_ PDB info PDB header:transferase Chain: B: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of the type i restriction-modification2 system methyltransferase subunit from streptococcus3 thermophilus, northeast structural genomics consortium4 target sur80 Resolution 2.25 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	N	N	D	L	V	A	K	L	W	K	L	C	D	N	L	R	D	G	G	V	S	Y	Q	N	Y	V	N	E	L	A	S	L	L	F	L	K	M	C	K	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		T	S	Q	S	L	Y	Q	A	L	W	N	S	A	D	V	L	R	S	K	.	X	D	A	N	D	Y	K	S	Y	L	L	G	X	V	F	Y	K	Y	L	S	D	K	X	L	F	F	V	A	E	T	X	E	E	E	T	E	S	L	D	E	A	L	A	V	Y	R	K	Y	Y	E	D	E	E	T	H	E	D	L	L	A
Template Known Secondary structure													T	T					T	T	.	S																														T	T				S																T	T	T
Template Predicted Secondary structure																					.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
					44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.									100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure		.	.	.																				.	.																																						.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																				.	.																																						.	.	.	.	.	.	.	.
Query Sequence		.	.	.	G	Q	E	A	E	Y	L	P	E	G	Y	R	W	D	D	L	K	S	R	.	.	I	G	Q	E	Q	L	Q	F	Y	R	K	M	L	V	H	L	G	E	D	D	K	K	L	V	Q	A	V	F	H	N	V	S	T	T	I	T	E	.	.	.	.	.	.	.	.	P	K	Q	I	T	A	L	V	S	N	M
Query Conservation		.	.	.																				.	.																																						.	.	.	.	.	.	.	.
Alig confidence		.	.	.																				.	.																							.															.	.	.	.	.	.	.	.
Template Conservation																																																.
Template Sequence		V	I	T	D	E	X	S	Y	A	I	H	P	D	L	T	F	T	A	L	V	E	R	V	N	D	G	S	F	Q	L	E	D	L	A	Q	G	F	R	D	I	E	Q	S	D	E	L	.	Y	E	N	L	F	E	D	I	D	L	Y	S	K	K	L	G	A	T	P	Q	K	Q	N	Q	T	V	A	A	V	X	K	E	L
Template Known Secondary structure								S					G	G	G	S											T																T	T		G	G	.	G	T	T	T	T	T	T			T	T		T	T	T		S	S
Template Predicted Secondary structure																																																.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence		D	S	L	D	W	Y	N	G	A	H	G	K	S	R	D	D	F	G	D	M	Y	E	G	L	L	Q	K	N	A	N	E	T	K	S	G	A	G	Q	Y	F	T	P	R	P	L	I	K	T	I	I	H	L	L	.	.	.	.	K	P	Q	P	R	E	V	V	Q	D	P	A	A	G	T	A	G	F	L	I	E	A	D
Query Conservation																																																							.	.	.	.
Alig confidence							.	.	.	.																																													.	.	.	.
Template Conservation							.	.	.	.
Template Sequence		A	V	L	D	V	.	.	.	.	A	G	H	A	G	D	X	L	G	D	A	Y	E	Y	L	I	G	Q	F	A	T	D	S	G	K	K	A	G	E	F	Y	T	P	Q	P	V	A	K	L	X	T	Q	I	A	F	L	G	R	E	D	K	Q	G	F	T	L	Y	D	A	T	X	G	S	G	S	L	L	L	N	A	K
Template Known Secondary structure			T	S		S	.	.	.	.	S	S	S		T																	T	S				S	B																		T	T		T	T		S	S						T	T		T	T	S	T	T	G	G	G
Template Predicted Secondary structure							.	.	.	.
Template SS confidence
		165	.	.	.	.					170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		R	Y	V	K	S	Q	T	N	D	L	D	D	L	D	G	D	T	Q	D	F	Q	I	H	R	A	F	I	G	L	E	L	V	P	G	T	R	R	L	A	L	M	N	C	L	L	H	D	I	E	G	N	L	D	H	G	G	A	I	R	L	G	N	T	L	G	S	D	G	E	N	L	P	.	.	K	A	H	I	V	A
Query Conservation																																																																										.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.																.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template Sequence		R	Y	S	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	T	V	V	Y	F	G	Q	E	L	N	T	S	T	Y	N	L	A	R	X	N	X	I	L	H	G	V	P	I	E	N	Q	F	.	.	.	L	H	N	A	D	T	L	D	E	D	W	P	T	Q	E	P	T	N	F	D	G	V	L
Template Known Secondary structure					S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G								S															T	T			G	G	G			.	.	.				S		T	T	T	S		S			S	S				B	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template SS confidence
		241	.	.	.	.																.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		265	.	.	.	.	270	.	.	.	.	.	.										.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.																											.
Query SS confidence														.	.	.	.	.	.	.	.	.																											.
Query Sequence		T	N	P	P	F	G	S	A	A	G	T	N	.	.	.	.	.	.	.	.	.	I	T	R	T	F	V	H	P	T	S	N	K	Q	L	C	F	M	Q	H	I	I	E	T	L	H	P	.	G	G	R	A	A	V	V	V	P	D	N	V	L	F	E	G	G	K	G	T	D	I	R	R	D	L	M	D	K	C	H	L
Query Conservation														.	.	.	.	.	.	.	.	.																											.
Alig confidence														.	.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		X	N	P	P	Y	S	A	K	W	S	A	S	S	G	F	X	D	D	P	R	F	S	P	F	G	K	L	A	P	K	S	K	A	D	F	A	F	L	L	H	G	Y	Y	H	L	K	Q	D	N	G	V	X	A	I	V	L	P	H	G	V	L	F	R	G	N	A	E	G	T	I	R	K	A	L	L	E	E	G	A	I
Template Known Secondary structure						B	T							G	G	G	G	G	S	T	T	T	G	G	G	S	S				T	T													T	B		T	T	T									T																			T	T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	I	L	R	L	P	T	G	I	F	Y	A	Q	G	V	K	T	N	V	L	F	F	T	K	G	T	V	A	N	P	N	Q	D	K	N	C	T	D	D	V	W	V	Y	D	L	R	T	N	M	P	S	F	G	K	R	T	P	F	T	D	E	H	L	Q	P	F	E	R	V	Y	G	E	D	P	H	G	L	S	P
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Sequence		D	T	V	I	G	L	P	A	N	I	F	F	N	T	S	I	P	T	T	V	I	I	L	K	K	N	R	T	.	.	.	.	.	.	.	.	.	N	R	D	V	Y	F	I	D	A	S	K	E	F	D	K	G	K	N	Q	N	I	X	T	D	A	H	I	E	K	I	L	N	A	Y	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S	S		S	S	S												S	S		S	.	.	.	.	.	.	.	.	.										T	T						S	S	S																.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410										.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	E	G	E	W	S	F	N	A	E	E	T	E	V	A	D	S	E	E	N	K	N	T	D	Q	H	L	A	T	S	R	W
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	K	S	R	E	D	I	D	K	F	A	H	L	A	S	F	E	E	I	V	E	N	D	Y	N	L	N	I	P	R	Y
Template Known Secondary structure		.	.	.			T			B	T	T	T												T	T	T				G	G	G	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.