Job Description P08957 Confidence 100.00% Date Thu Jan 5 11:01:44 GMT 2012 Rank 4 Aligned Residues 416 % Identity 24% Template c3khkA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei. Resolution 2.55 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	D	L	V	A	K	L	W	K	L	C	D	N	L	R	D	G	G	V	S	Y	Q	N	Y	V	N	E	L	A	S	L	L	F	L	K	M	C	K	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.
Template Sequence		N	D	L	D	N	Q	L	W	R	A	A	D	K	L	R	S	N	.	L	D	A	A	N	Y	K	H	V	V	L	G	L	I	F	L	K	Y	V	S	D	A	F	E	E	R	Q	Q	E	L	T	E	L	F	Q	K	D	D	D	D	N	I	Y	Y	L	P	R	E	D	Y	D	S	D	E	A	Y	Q	Q	A	I	A	E
Template Known Secondary structure														T	T		T	T	.																																		T	T				T	T		S	S				G	G	G		S	S
Template Predicted Secondary structure																			.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
											44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																							.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																							.	.
Query Sequence		.	.	.	.	.	.	.	.	.	G	Q	E	A	E	Y	L	P	E	G	Y	R	W	D	D	L	K	S	R	I	G	Q	.	.	E	Q	L	Q	F	Y	R	K	M	L	V	H	L	G	E	D	D	K	K	L	V	Q	A	V	F	H	N	V	S	T	T	I	T	E	P	K	Q	I	T	A	L	V	S	N	M	D	S
Query Conservation		.	.	.	.	.	.	.	.	.																							.	.
Alig confidence		.	.	.	.	.	.	.	.	.																							.	.																		.
Template Conservation																																																				.
Template Sequence		E	L	E	I	G	D	Y	Y	T	E	K	N	V	F	W	V	P	K	T	A	R	W	N	K	L	R	D	V	I	T	L	P	T	S	V	S	W	L	I	D	N	A	F	D	D	I	E	K	A	N	.	P	K	L	K	G	I	L	N	R	I	S	Q	Y	Q	L	D	A	D	K	L	I	G	L	I	N	E	F	S	K
Template Known Secondary structure				T		T					T	T	T						T	T	T										S	S																				.	G	G	G	S	S		S			S	S	S	S
Template Predicted Secondary structure																																																				.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	W	Y	N	G	A	H	G	K	S	R	D	D	F	G	D	M	Y	E	G	L	L	Q	K	N	A	N	E	T	K	S	G	A	G	Q	Y	F	T	P	R	P	L	I	K	T	I	I	H	L	L	K	P	Q	P	R	E	V	V	Q	D	P	A	A	G	T	A	G	F	L	I	E	A	D	R	Y	V	K	S	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	D	I	L	G	H	V	Y	E	Y	F	L	G	Q	F	A	L	A	E	G	K	Q	G	G	Q	Y	Y	T	P	K	S	I	V	T	L	I	V	E	M	L	E	P	Y	K	G	.	R	V	Y	D	P	A	M	G	S	G	G	F	F	V	S	S	D	K	F	I	E	K	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.		S															T	T	T			S	T	T	T																		S		.					S	S		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template SS confidence
														202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	D	L	D	D	L	D	G	D	T	Q	D	F	Q	I	H	R	A	F	I	G	L	E	L	V	P	G	T	R	R	L	A	L	M	N	C	L	L	H	D	I	E	G	N	L	D	H	G	G	A	I	R	L	G	N	T	L	G	S	D	G	E	N	L	P	K	A	H	I	V	A	T	N	P	P	F	G	S	A
Query Conservation
Alig confidence						.	.	.																																							.	.	.	.
Template Conservation						.	.	.																																							.	.	.	.
Template Sequence		A	N	V	K	.	.	.	H	Y	N	A	S	E	Q	K	K	Q	I	S	V	Y	G	Q	E	S	N	P	T	T	W	K	L	A	A	M	N	M	V	I	R	G	I	D	F	N	.	.	.	.	F	G	K	K	N	A	D	S	F	L	D	D	Q	H	P	D	L	R	A	D	F	V	M	T	N	P	P	F	N	M	K
Template Known Secondary structure						.	.	.	T	S						G	G	G																							T	T				B	.	.	.	.			S	S	S			T	T	T	S		S		T	T												S	S
Template Predicted Secondary structure						.	.	.																																							.	.	.	.
Template SS confidence
		269	270	.	.				.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310					.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		273	.	.	.														.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Query Sequence		A	G	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	R	T	F	V	H	P	T	S	N	K	Q	L	C	F	M	Q	H	I	I	E	T	L	H	P	G	G	R	A	A	V	V	V	P	D	N	V	L	F	.	E	G	G	K	G	T	D	I	R	R	D	L	M	D	K	C	H	L	H	T	I	L
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Conservation
Template Sequence		D	W	W	H	E	K	L	A	D	D	P	R	W	T	I	N	T	N	K	R	I	L	T	P	P	T	G	N	A	N	F	A	W	M	L	H	M	L	Y	H	L	A	P	T	G	S	M	A	L	L	L	A	N	G	S	M	S	S	N	T	N	N	E	G	E	I	R	K	T	L	V	E	Q	D	L	V	E	C	M	V
Template Known Secondary structure		S				G	G	G	T	T		G	G	G													T	T		T											T													T							G	G	G											T	T
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		R	L	P	T	G	I	F	Y	A	Q	G	V	K	T	N	V	L	F	F	T	K	G	T	V	A	N	P	N	Q	D	K	N	C	T	D	D	V	W	V	Y	D	L	R	T	N	M	P	S	F	.	G	K	R	T	P	F	T	D	E	H	L	Q	P	F	E	R	V	Y	G	E	D	P	H	G	L	S	P	R	T	E
Query Conservation																																																			.
Alig confidence																										.																									.
Template Conservation																										.
Template Sequence		A	L	P	G	Q	L	F	T	N	T	Q	I	P	A	C	I	W	F	L	T	K	D	K	N	.	A	K	N	G	K	R	D	R	R	G	Q	V	L	F	I	D	A	R	K	L	G	Y	M	K	D	R	V	L	R	D	F	K	D	E	D	I	Q	K	L	A	D	T	F	H	N	W	Q	Q	E	W	S	E	E	N	N
Template Known Secondary structure					T	T	B			S		S	S									S			S	.	S	B	T	T	B				T	T								T	T		S			S	S	S	S																									T	T	T
Template Predicted Secondary structure																										.
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	W	S	F	N	A	E	E	T	E	V	A	D	S	E	E	N	K	N	T	D	Q	H	L	A	T	S	R	W
Query Conservation
Alig confidence				.	.	.	.	.
Template Conservation				.	.	.	.	.
Template Sequence		Q	A	.	.	.	.	.	G	F	C	F	S	A	D	L	A	L	I	R	K	N	D	F	V	L	T	P	G	R	Y
Template Known Secondary structure		B	T	.	.	.	.	.	T	T												T	T	T				T	T	T	T
Template Predicted Secondary structure				.	.	.	.	.
Template SS confidence
		503	.						.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.