Job Description P08957 Confidence 99.65% Date Thu Jan 5 11:01:44 GMT 2012 Rank 14 Aligned Residues 189 % Identity 14% Template c3fuxB_ PDB info PDB header:transferase Chain: B: PDB Molecule:dimethyladenosine transferase; PDBTitle: t. thermophilus 16s rrna a1518 and a1519 methyltransferase (ksga) in2 complex with 5'-methylthioadenosine in space group p212121 Resolution 1.68 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		D	M	Y	E	G	L	L	Q	K	N	A	N	E	T	K	S	G	A	G	Q	.	Y	F	T	P	R	P	L	I	K	T	I	I	H	L	L	K	P	Q	P	R	E	V	V	Q	D	P	A	A	G	T	A	G	F	L	I	E	A	D	R	Y	V	K	S	Q	T	N	D	L	D	D	L	D	G	D	T	Q	D	F	Q
Query Conservation																						.
Alig confidence																						.																		.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	S	V	R	A	L	L	E	R	H	G	L	F	A	D	K	R	F	G	Q	N	F	L	V	S	E	A	H	L	R	R	I	V	E	A	A	R	P	.	F	T	G	P	V	F	E	V	G	P	G	L	G	A	L	T	R	A	L	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T					G	G	G	T																				.			S								T	T	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	R	A	F	I	G	L	E	L	V	P	G	T	R	R	L	A	L	M	N	C	L	L	H	D	I	E	G	N	L	D	H	G	G	A	I	R	L	G	N	T	L	G	S	D	G	E	N	L	P	K	A	H	I	V	A	T	N	P	P	F	G	S	A	A	G	T	N	I	T	R	T	F	V	H	P	T	S	N
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	A	E	V	T	A	I	E	K	D	L	R	L	R	P	V	L	E	E	T	L	S	G	L	P	V	R	.	.	.	.	.	.	.	.	L	V	F	Q	D	A	L	L	Y	P	W	E	E	V	P	Q	G	S	L	L	V	A	N	L	P	Y	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T								S		G	G	G								T	T	T	S				.	.	.	.	.	.	.	.				S		G	G	G	S		G	G	G	S		T	T									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.									.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.							.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																													.	.	.	.	.	.																																			.
Query SS confidence																													.	.	.	.	.	.																																			.
Query Sequence		K	Q	L	C	F	M	Q	H	I	I	E	T	L	H	P	G	G	R	A	A	V	V	V	P	D	N	V	.	.	.	.	.	.	L	F	E	G	G	K	G	T	D	I	R	R	D	L	M	D	K	C	H	L	H	T	I	L	R	L	P	T	G	I	F	Y	A	Q	.	G	V	K	T	N	V	L	F	F	T	K	G
Query Conservation																													.	.	.	.	.	.																																			.
Alig confidence														.															.	.	.	.	.	.																																			.
Template Conservation														.
Template Sequence		I	A	T	P	L	V	T	R	L	L	K	T	.	G	R	F	A	R	L	V	F	L	V	Q	K	E	V	A	E	R	M	T	A	R	P	K	T	P	A	Y	G	V	L	T	L	R	V	A	H	H	A	V	A	E	R	L	F	D	L	P	P	G	A	F	F	P	P	P	K	V	W	S	S	L	V	R	L	T	P	T
Template Known Secondary structure		T												.																						T	T	S	T	T		S																				G	G	G			S			S	S
Template Predicted Secondary structure														.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		361	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	L	D
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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