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Job DescriptionP08957
Confidence99.44%DateThu Jan 5 11:01:44 GMT 2012
Rank28Aligned Residues119
% Identity16%Templatec2pjdA_
PDB info PDB header:transferaseChain: A: PDB Molecule:ribosomal rna small subunit methyltransferase c; PDBTitle: crystal structure of 16s rrna methyltransferase rsmc
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   156...160.........170.........180.........190.........200.........210.........220.........230.....
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Query Sequence  IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE
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Template Sequence  SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS. . . . . . . . . . . . . . . . . . PKIRLTLCDVSAPAVEASRATLAANGVE
Template Known Secondary structure  S
TT

SB

BTT
TTS
..................TT
B
SBTT

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   185....190.........200.........210........ .220.........230.........240......
 
   236...240.........250.........260......... 270.........280.........290.........300.........310..
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Query Sequence  GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF. . GSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD
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Template Sequence  GEVFASNVFSEVK. . . . . . . . . GRFDXIISNPPFHDGMQTSLDAAQ. . . . . . . . . . . TLIRGAVRHLNSGGELRIVANA
Template Known Secondary structure 

STTTT

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SSS...........GGGT
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   247..250......... 260.........270.........280... ......290.........300.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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