Job Description Q46897 Confidence 100.00% Date Thu Jan 5 12:35:37 GMT 2012 Rank 1 Aligned Residues 187 % Identity 34% Template c3qrqA_ PDB info PDB header:rna binding protein/rna Chain: A: PDB Molecule:putative uncharacterized protein tthb192; PDBTitle: structure of thermus thermophilus cse3 bound to an rna representing a2 pre-cleavage complex Resolution 3.19 Å

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		1	.	.	.	.	.	.	.	.							10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.																												.																													.	.	.	.
Query SS confidence											.	.	.	.	.	.																												.																													.	.	.	.
Query Sequence		M	Y	L	S	K	V	I	I	A	.	.	.	.	.	.	R	A	W	S	R	D	L	Y	Q	L	H	Q	G	L	W	H	L	F	P	N	R	P	D	A	A	R	D	.	F	L	F	H	V	E	K	R	N	T	P	E	G	C	H	V	L	L	Q	S	A	Q	M	P	V	S	T	A	.	.	.	.	V	A	T	V	I
Query Conservation											.	.	.	.	.	.																												.																													.	.	.	.
Alig confidence											.	.	.	.	.	.																												.																													.	.	.	.
Template Conservation
Template Sequence		M	W	L	T	K	L	V	L	N	P	A	S	R	A	A	R	R	D	L	A	N	P	Y	E	M	H	R	T	L	S	K	A	V	S	R	A	L	E	E	G	R	E	R	L	L	W	R	L	E	P	A	R	G	L	E	P	P	V	V	L	V	Q	T	L	T	E	P	D	W	S	V	L	D	E	G	Y	A	Q	V	F
Template Known Secondary structure											T	T																			T	T	T	T						T	T													S	S										S	S				G	G	G	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.
Query SS confidence																																																																						.	.	.	.
Query Sequence		K	T	K	Q	V	E	F	Q	L	Q	V	G	V	P	L	Y	F	R	L	R	A	N	P	I	K	T	I	L	D	N	Q	K	R	L	D	S	K	G	N	I	K	R	C	R	V	P	L	I	K	E	A	E	Q	I	A	W	L	Q	R	K	L	G	N	A	A	R	V	E	.	.	.	.	D	V	H	P	I	S	E	R
Query Conservation																																																																						.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	P	K	P	F	H	P	A	L	K	P	G	Q	R	L	R	F	R	L	R	A	N	P	A	K	R	L	A	.	.	.	.	.	.	.	.	.	.	.	A	T	G	K	R	V	A	L	K	T	P	A	E	K	V	A	W	L	E	R	R	L	E	E	G	G	F	R	L	L	E	G	E	R	G	P	W	V	Q	I	L
Template Known Secondary structure												T	T																T	.	.	.	.	.	.	.	.	.	.	.	T	T	S							S															T	T							T	T			S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.												.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	Y	F	S	G	D	G	K	S	G	K	I	Q	T	V	C	F	E	G	V	L	T	I	N	D	A	P	A	L	I	D	L	V	Q	Q	G	I	G	P	A	K	S	M	G	C	G	L	L	S	L	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	D	T	F	L	E	V	R	R	L	L	Q	V	Q	A	V	L	F	E	G	R	L	E	V	V	D	P	E	R	A	L	A	T	L	R	R	G	V	G	P	G	K	A	L	G	L	G	L	L	S	V	A	P
Template Known Secondary structure																										S													S	S	S		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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