Job Description P32135 Confidence 99.98% Date Thu Jan 5 11:49:20 GMT 2012 Rank 3 Aligned Residues 383 % Identity 11% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	W	A	L	F	S	L	L	T	L	C	G	G	T	I	Y	K	L	P	S	L	K	D	A	F	Y	I	P	M	Q	E	Y	F	H	L	T	N	G	Q	I	G	N	A	M	S	V	N	S	F	V	T	T	V	G	F	F	L	S	I	Y	F	A	D	K	L	P	R	R	Y	T	M	S	F	S	L	I	A	T	G
Query Conservation
Alig confidence																				.	.	.
Template Conservation																				.	.	.
Template Sequence		R	S	Y	I	I	P	F	A	L	L	C	S	L	F	F	L	W	A	.	.	.	V	A	N	N	L	N	D	I	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A
Template Known Secondary structure			T	T	T															.	.	.															T	T			T	T													T	T											S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		L	L	G	V	Y	L	T	T	M	.	.	.	P	G	Y	W	G	I	L	F	V	W	A	L	F	G	V	T	C	D	M	M	N	W	P	V	L	L	K	S	V	S	R	L	G	N	S	E	Q	Q	G	R	L	F	G	F	F	E	T	G	R	G	I	V	D	T	V	V	A	F	S	A	L	A	V	F	T	W	F	G
Query Conservation											.	.	.
Alig confidence											.	.	.																					.
Template Conservation																																		.
Template Sequence		L	G	A	A	L	F	W	P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	.	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V
Template Known Secondary structure						T							T	T																				.											S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure																																		.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.																					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	L	L	G	F	K	A	G	I	W	F	Y	S	L	I	V	I	A	V	G	I	I	I	F	F	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	K	E	E	A	P	S	V	E	V	K	K	E	D	G	A	S	K	N	T	S	M	T	S	V	L	K	D	K	T	I
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	H	Q	S	Q	D	V	L	D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	R
Template Known Secondary structure												S																	T	T																			S						T	T	T					S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	I	A	F	N	V	F	F	V	Y	A	V	Y	C	G	L	T	F	F	I	P	F	L	K	N	I	Y	L	L	P	V	A	L	V	G	A	Y	G	I	I	N	Q	Y	C	L	K	M	I	G	G	P	I	G	G	M	I	S	D	K	I	L	K	S	P	S	K	Y	L	C	Y	T	F	I	I	S	T	A	A	L
Query Conservation
Alig confidence																																																																			.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.
Template Sequence		W	A	V	L	A	Q	F	C	Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F	A	P	H	K	.	.	.	.	.	.	.	V	L	A	A	Y	A	L	I
Template Known Secondary structure																													S	T	T																															S					.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.								.	.	.	330	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	L	I	M	L	P	H	E	S	M	P	V	Y	L	G	M	A	C	T	L	G	F	G	A	I	V	F	T	Q	R	A	V	F	F	A	P	I	G	E	A	K	I	A	E	N	K	T	G	A	A	M	A	L	G	S	F	I	G	Y	A	P	A	M	F	C	F	S	L	Y	G	Y	I	L	D	L	N	P	G	I
Query Conservation
Alig confidence																																											.									.	.																												.
Template Conservation																																											.									.	.																												.
Template Sequence		A	M	A	L	C	L	I	S	A	F	A	G	G	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	.	L	G	Q	D	T	K	Y	G	.	.	S	S	F	I	V	M	T	I	I	G	G	G	I	V	T	P	V	M	G	F	V	S	D	A	A	G	N	.
Template Known Secondary structure												S																	T	T											S	S	.		G	G	G					.	.							G	G	G																	T	S	.
Template Predicted Secondary structure																																											.									.	.																												.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	Y	K	I	V	F	G	I	M	A	C	F	A	F	S	G	A	V	V	S	V	M
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	I	P	T	A	E	L	I	P	A	L	C	F	A	V	I	F	I	F	A	R	F
Template Known Secondary structure		.	.	S	G	G	G	G															T	S
Template Predicted Secondary structure		.	.
Template SS confidence
				411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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