Return to main results Retrieve Phyre Job Id

Job DescriptionP32135
Confidence89.68%DateThu Jan 5 11:49:20 GMT 2012
Rank6Aligned Residues418
% Identity8%Templatec3mkuA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
Resolution4.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.. .......50.........60.........70....
Predicted Secondary structure 



.
........
Query SS confidence 






































.































. . . . . . . .
Query Sequence  KKKWALFSLLTLCGGTIYKLPSLKDAFYIPMQEYFHLTN. GQIGNAMSVNSFVTTVGFFLSIYFADKLPRRY. . . . . . . .
Query Conservation 
  
                               
 
 .   
   
       
     
 
 

 


 ........
Alig confidence 






































.































........
Template Conservation      
 
   
 
     
       
    
  

        

            

  
    

           
Template Sequence  KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKI
Template Known Secondary structure  TTTTTTGGG
TTS
SSSSSSS
Template Predicted Secondary structure 




Template SS confidence 















































































   910.........20.........30.........40.........50.........60.........70.........80........
 
   75....80.........90.........100.........110.........120.........130.........140
Predicted Secondary structure  ..............













Query SS confidence  . . . . . . . . . . . . . .

































































Query Sequence  . . . . . . . . . . . . . . TMSFSLIATGLLGVYLTTMPGYWGILFVWALFGVTCDMMNWPVLLKSVSRLGNSEQQGRLFGFFET
Query Conservation  .............. 
                              
                                 
Alig confidence  ..............

































































Template Conservation           
  
               
            
               
       
              
Template Sequence  PFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGF
Template Known Secondary structure 
SS
SSTTTTTT
TTS


Template Predicted Secondary structure 






Template SS confidence 















































































   8990.........100.........110.........120.........130.........140.........150.........160........
 
   141........150.........160.........170.........180.........190.........200.........210.........220
Predicted Secondary structure 




















































Query SS confidence 















































































Query Sequence  GRGIVDTVVAFSALAVFTWFGSGLLGFKAGIWFYSLIVIAVGIIIFFVLNDKEEAPSVEVKKEDGASKNTSMTSVLKDKT
Query Conservation                                                                                  
Alig confidence 















































































Template Conservation     
  
     
             
                                                     
Template Sequence  IGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV
Template Known Secondary structure  TT
SS



T
TT










SSTTTSTTTT
Template Predicted Secondary structure 





















Template SS confidence 















































































   169170.........180.........190.........200.........210.........220.........230.........240........
 
   221........230.........240.........250.........260.........270.........280.........290.........300
Predicted Secondary structure 


























































Query SS confidence 















































































Query Sequence  IWLIAFNVFFVYAVYCGLTFFIPFLKNIYLLPVALVGAYGIINQYCLKMIGGPIGGMISDKILKSPSKYLCYTFIISTAA
Query Conservation                                                                                  
Alig confidence 















































































Template Conservation                       
   

       
          
     
                            
Template Sequence  AAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLAT
Template Known Secondary structure  T

S
STTTGGGSS


TTTT
Template Predicted Secondary structure 






Template SS confidence 















































































   249250.........260.........270.........280.........290.........300.........310.........320........
 
   301...... ..310.........320.........330.........340.........350.........360.........370
Predicted Secondary structure  ..........










Query SS confidence 






. . . . . . . . . .






























































Query Sequence  LVLLIML. . . . . . . . . . PHESMPVYLGMACTLGFGAIVFTQRAVFFAPIGEAKIAENKTGAAMALGSFIGYAPAMFCFSL
Query Conservation         ..........                                          
   
               
Alig confidence 






..........






























































Template Conservation                
  
              
 
                 
   
                 
    
Template Sequence  ACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYI
Template Known Secondary structure  TSS
SSTTGGGSS
Template Predicted Secondary structure 





Template SS confidence 















































































   329330.........340.........350.........360.........370.........380.........390.........400........
 
   371........380.........390.........400.........410.........420.
Predicted Secondary structure 








Query SS confidence 


















































Query Sequence  YGYILDLNPGIIGYKIVFGIMACFAFSGAVVSVMLVKRISQRKKEMLAAEA
Query Conservation   
 
        
    
                       
  
    

Alig confidence 


















































Template Conservation 
           
  
   
         
          
          
Template Sequence  LGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQSDDVQLHLA
Template Known Secondary structure  SSS

S
TGGGSTTT

SS
TTTTTSS
Template Predicted Secondary structure 






Template SS confidence 


















































   409410.........420.........430.........440.........450.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions