Job Description P32135 Confidence 99.97% Date Thu Jan 5 11:49:20 GMT 2012 Rank 4 Aligned Residues 368 % Identity 10% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	L	L	T	L	C	G	G	T	I	Y	K	L	P	S	L	K	D	A	F	Y	I	P	M	Q	E	Y	F	H	L	T	N	G	Q	I	G	N	A	M	S	V	N	S	F	V	T	T	V	G	F	F	L	S	I	Y	F	A	D	K	L	P	R	R	Y	T	M	S	F	S	L	I	A	T	G	L	L	G	V	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	V	I	L	V	G	M	S	I	F	M	L	A	T	L	V
Template Known Secondary structure																												T	T	S	S	S	T	T																			T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	T	M	P	G	Y	W	G	I	L	F	V	W	A	L	F	G	V	T	C	D	M	M	N	W	P	V	L	L	K	S	V	S	R	L	G	N	S	E	Q	Q	G	R	L	F	G	F	F	E	T	G	R	G	I	V	D	T	V	V	A	F	S	A	L	A	V	F	T	W	F	G	S	G	L	L	G	F	K	A
Query Conservation
Alig confidence																						.																																																						.	.	.	.	.	.
Template Conservation																						.																																																						.	.	.	.	.	.
Template Sequence		A	V	T	T	S	S	L	T	V	L	I	A	A	S	A	M	Q	G	M	G	.	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R	.	.	.	.	.	.
Template Known Secondary structure																						.																		T	S	S			S																							S	S							.	.	.	.	.	.
Template Predicted Secondary structure																						.																																																						.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	W	F	Y	S	L	I	V	I	A	V	G	I	I	I	F	F	V	L	N	D	K	E	E	A	P	S	V	E	V	K	K	E	D	G	A	S	K	N	T	S	M	T	S	V	L	K	D	K	T	I	W	L	I	A	F	N	V	F	F	V	Y	A	V	Y	C	G	L	T	F	F	I	P	F	L	K	N	I	Y
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	A	C	Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A	C	S	G	V	L	M	G	A	V
Template Known Secondary structure		.	.	.	.	.																				S	S				S	T	T	T						T	T	T		S	T																														S		S	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	P	V	A	L	V	G	A	Y	G	I	I	N	Q	Y	C	L	K	M	I	G	G	P	I	G	G	M	I	S	D	K	I	L	K	S	P	S	K	Y	L	C	Y	T	F	I	I	S	T	A	A	L	V	L	L	I	M	L	P	H	E	S	M	P	V	Y	L	G	M	A	C	T	L	G	F	G	A	I	V	F
Query Conservation
Alig confidence																																																												.	.	.
Template Conservation																																																												.	.	.
Template Sequence		L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	F	G	.	.	.	V	M	N	V	W	T	L	L	V	P	A	A	L	F	F	F	G	A	G
Template Known Secondary structure															T														T	T	T	T																T	S	S	S	S	S							.	.	.
Template Predicted Secondary structure																																																												.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	R	A	V	F	F	A	P	I	G	E	A	K	I	A	E	N	K	T	G	A	A	M	A	L	G	S	F	I	G	Y	A	P	A	M	F	C	F	S	L	Y	G	Y	I	L	D	L	N	P	G	I	I	G	Y	K	I	V	F	G	I	M	A	C	F
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence		M	L	F	P	L	A	T	S	G	A	M	E	P	F	.	.	P	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	G	S	L	G	L	L	M	T	L	M	G	L	L	I	V
Template Known Secondary structure			T	S	S	T	T						T			.	.																							S	T	T		T
Template Predicted Secondary structure																.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.			.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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