Job Description P0A879 Confidence 100.00% Date Thu Jan 5 11:07:07 GMT 2012 Rank 38 Aligned Residues 344 % Identity 16% Template d1vb3a1 SCOP info Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Resolution 2.20

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		13	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30					.	.	.	.	.									.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.								.	.	.	.						.	.	.	.	.	.	.	.
Query SS confidence													.								.	.	.	.						.	.	.	.	.	.	.	.
Query Sequence		G	G	M	Y	V	P	Q	I	L	M	P	.	A	L	R	Q	L	E	E	.	.	.	.	A	F	V	S	A	.	.	.	.	.	.	.	.	Q	K	D	P	E	F	Q	A	Q	F	N	D	L	L	K	N	Y	A	G	R	P	T	A	L	T	K	C	Q	N	I	T	A	G	T	N	T	T	L	Y	L	K	R	E	D
Query Conservation													.								.	.	.	.						.	.	.	.	.	.	.	.
Alig confidence													.								.	.	.	.						.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.
Template Sequence		Q	G	L	F	F	P	H	D	L	P	E	F	S	L	T	E	I	D	E	M	L	K	L	D	F	V	T	R	S	A	K	I	L	S	A	F	I	G	D	E	I	P	Q	E	I	L	E	E	R	V	R	A	A	F	A	F	P	A	P	V	A	N	V	.	.	.	.	.	.	.	E	S	D	V	G	C	L	E	L	F
Template Known Secondary structure		G	B					S	S													T	T	S															G	G	G	S															S								.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.								90	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure														.	.																																.
Query SS confidence														.	.																																.
Query Sequence		L	L	H	G	G	A	H	K	T	N	Q	V	.	.	L	G	Q	A	L	L	A	K	R	M	G	K	T	E	I	I	A	E	T	G	A	G	Q	H	G	V	A	S	A	L	A	.	S	A	L	L	G	L	K	C	R	I	Y	M	G	A	K	D	V	E	R	Q	S	P	N	V	F	R	M	R	L	M	G	A	E	V
Query Conservation														.	.																																.
Alig confidence														.	.																																.																.	.
Template Conservation																																																															.	.
Template Sequence		H	G	P	T	L	A	F	K	D	F	G	G	R	F	M	A	Q	M	L	T	H	I	A	G	D	K	P	V	T	I	L	T	A	T	S	G	D	T	G	A	A	V	A	H	A	F	Y	G	L	P	N	V	K	V	V	I	L	Y	P	R	G	.	.	K	I	S	P	L	Q	E	K	L	F	C	T	L	G	G	N	I
Template Known Secondary structure			S	T	T	S	B	T																T	T	T										S	S	S									T	T	T		T	T									T	T	.	.		S										S			T	T
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
				157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	I	P	V	H	S	G	S	A	T	L	K	D	A	C	N	E	A	L	R	D	W	S	G	S	Y	E	T	A	H	Y	M	L	G	T	A	A	G	P	H	P	Y	P	T	I	V	R	E	F	Q	R	M	I	G	E	E	T	K	A	Q	I	L	E	R	E	G	R	L	P	D	A	V	I	A	C	V	G	G	G
Query Conservation		.	.
Alig confidence		.	.																															.	.	.	.	.	.																												.
Template Conservation																																		.	.	.	.	.	.																												.
Template Sequence		E	T	V	A	I	D	G	D	F	D	A	C	Q	A	L	V	K	Q	A	F	D	D	E	E	L	K	V	A	L	G	L	N	.	.	.	.	.	.	S	A	N	S	I	N	I	S	R	L	L	A	Q	I	C	Y	Y	F	E	A	V	A	Q	L	P	Q	E	.	T	R	N	Q	L	V	V	S	V	P	S	G	N	F
Template Known Secondary structure								S												G	G	G									T			.	.	.	.	.	.			S	T	T	S							T	T								T	T	S		T	T	.	T	T	T	S								S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.																												.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.							210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250
		235	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.
Predicted Secondary structure														.																																																													.	.
Query SS confidence														.																																																													.	.
Query Sequence		S	N	A	I	G	M	F	A	D	F	I	N	.	E	T	N	V	G	L	I	G	V	E	P	G	G	H	G	I	E	T	G	E	H	G	A	P	L	K	H	G	R	V	G	I	Y	F	G	M	K	A	P	M	M	Q	T	E	D	G	Q	I	E	E	S	Y	S	I	S	A	G	L	D	F	.	.	P	S	V	G	P
Query Conservation														.																																																													.	.
Alig confidence														.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	D	L	T	A	G	L	L	A	K	S	L	G	L	P	V	K	R	F	I	A	A	T	N	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	V	P	R	F	L	H	D	G	Q	W	S	P	K	A	T	Q	A	T	L	S	N	A	M	D	V	S	Q	P	N	N	W	P
Template Known Secondary structure													T	T				S								S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S											S	S	G	G	G			S	S		T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.																					.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		312	.	.	.	.	.	.	.	320	.	.	.						.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		Q	H	A	Y	L	N	S	T	G	R	A	D	.	.	.	.	.	Y	V	S	I	T	D	D	E	A	L	E	A	F	K	T	L	C	L	H	E	G	I	I	P	A	L	E	S	S	H	A	L	A	H	A	L	K	M	M	R	E	N	P	D	K	E	Q	L	L	V	V	N	L	S	G	R	G	D	K	D	I	F	T
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.																			.																	.	.	.	.
Template Conservation																																					.																	.	.	.	.
Template Sequence		R	V	E	E	L	F	R	R	K	I	W	Q	L	K	E	L	G	Y	A	A	V	D	D	E	T	T	Q	Q	T	M	R	E	L	K	E	.	L	G	Y	T	S	E	P	H	A	A	V	A	Y	R	A	L	.	.	.	.	R	D	Q	L	N	P	G	E	Y	G	L	F	L	G	T	A	H	P	A	K	F	K	E	S
Template Known Secondary structure										T	T			G	G	G	S																				.	T	T															.	.	.	.		T	T			T	T									B		G	G	G	G
Template Predicted Secondary structure																																					.																	.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.					.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	D	I	L	K	A	R	G	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	A	I	L	G	E	T	L	D	L
Template Known Secondary structure							T	S
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions