Phyre 2 alignment of P0A879 with d1e5xa

Job Description P0A879
Confidence 100.00% Date Thu Jan 5 11:07:07 GMT 2012

Rank 36 Aligned Residues 294

% Identity 16% Template d1e5xa_

SCOP info Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes

Resolution 2.25

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	57	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.					.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure													.					.																														.	.	.	.
Query SS confidence													.					.																														.	.	.	.
Query Sequence	T	A	L	T	K	C	Q	N	I	T	A	G	.	T	N	T	T	.	L	Y	L	K	R	E	D	L	L	H	G	G	A	H	K	T	N	Q	V	L	G	Q	A	L	L	A	K	R	M	.	.	.	.	G	K	T	E	I	I	A	E	T	G	A	G	Q	H	G	V	A	S	A	L	A	S	A	L	L	G	L	K	C
Query Conservation													.					.																														.	.	.	.
Alig confidence													.					.																														.	.	.	.
Template Conservation
Template Sequence	S	N	L	F	W	A	E	R	F	G	K	Q	F	L	G	X	N	D	L	W	V	K	H	C	G	I	S	H	T	G	S	F	K	D	L	G	X	T	V	L	V	S	Q	V	N	R	L	R	K	X	K	R	P	V	V	G	V	G	C	A	S	T	G	D	T	S	A	A	L	S	A	Y	C	A	S	A	G	I	P	S
Template Known Secondary structure																	S	S						T	T	S	S	T	T	S	B	T	T																	T	T												S														T
Template Predicted Secondary structure
Template SS confidence
	131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

	131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence	R	I	Y	M	G	A	K	D	V	E	R	Q	S	P	N	V	F	R	M	R	L	M	G	A	E	V	I	P	V	H	S	G	S	A	T	L	K	D	A	C	N	E	A	L	R	D	W	S	G	S	Y	E	T	A	H	Y	M	L	G	T	A	A	G	P	H	P	Y	P	T	I	V	R	E	F	Q	R	M	I	G	E
Query Conservation
Alig confidence								.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	V	F	L	P	A	N	.	.	K	I	S	X	A	Q	L	V	Q	P	I	A	N	G	A	F	V	L	S	I	D	T	D	F	D	G	C	X	K	L	I	R	E	I	T	A	E	L	.	.	.	.	.	.	.	.	.	.	.	.	P	I	Y	L	A	N	S	L	N	S	L	R	L	E	G	Q	K	T	A	A	I
Template Known Secondary structure						G	G	.	.	G												T	T							S	S																S	.	.	.	.	.	.	.	.	.	.	.	.					G	G	G	S									T
Template Predicted Secondary structure								.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	211	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.													.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

	211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence	E	T	K	A	Q	I	L	E	R	E	G	R	L	P	D	A	V	I	A	C	V	G	G	G	S	N	A	I	G	M	F	A	D	F	I	N	E	T	N	V	G	L	I	G	V	E	P	G	G	H	G	I	E	T	G	E	H	G	A	P	L	K	H	G	R	V	G	I	Y	F	G	M	K	A	P	M	M	Q	T	E
Query Conservation
Alig confidence								.	.	.																									.																																				.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.																									.																																				.	.	.	.	.	.	.	.	.	.
Template Sequence	E	I	L	Q	Q	F	D	.	.	.	W	Q	V	P	D	W	V	I	V	P	G	G	N	L	G	N	I	Y	A	F	Y	K	G	F	.	K	C	Q	E	L	G	L	V	D	R	I	P	R	X	V	C	A	Q	A	A	N	A	N	P	L	Y	L	H	Y	K	S	G	W	K	D	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	.	.	.	S				S							S	S	T											.			T	T	T	T	S	S	S											T	T	S	S	T							T	T	T	T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.																									.																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
	277	.	.	280	.	.	.				.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

	291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence	D	G	Q	I	E	E	S	Y	S	I	S	A	G	L	D	F	P	S	V	G	P	Q	H	A	Y	L	N	S	T	G	R	A	D	Y	V	S	I	T	D	D	E	A	L	E	A	F	K	T	L	C	L	H	E	G	I	I	P	A	L	E	S	S	H	A	L	A	H	A	L	K	M	M	R	E	N	P	.	D	K	E
Query Conservation																																																																													.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.																									.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	P	V	S	I	D	R	A	V	Y	A	L	K	K	C	N	G	I	V	E	E	A	T	E	E	E	L	X	D	A	X	A	Q	A	D	S	.	T	G	X	F	I	C	P	H	T	G	V	A	L	T	A	L	F	K	L	R	N	Q	G	V	I	A	P	T
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T																					.	T	T																				T	T	S	S		T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template SS confidence
															344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380		.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	L	L	V	V	N	L	S	G	R	G	D	K	D	I	F	T	V	H	D	I	L	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	D	R	T	V	V	V	S	T	A	H	G	L	K	F	T	Q	S	K	I	D	Y	H	S	N
Template Known Secondary structure									B		G	G	G	G									T	T
Template Predicted Secondary structure
Template SS confidence
	425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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