Job Description P0A879 Confidence 100.00% Date Thu Jan 5 11:07:07 GMT 2012 Rank 16 Aligned Residues 342 % Identity 16% Template c3r0zA_ PDB info PDB header:lyase Chain: A: PDB Molecule:d-serine dehydratase; PDBTitle: crystal structure of apo d-serine deaminase from salmonella2 typhimurium Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.									70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.
Predicted Secondary structure																																						.																.	.	.	.	.	.	.	.														.
Query SS confidence																																						.																.	.	.	.	.	.	.	.														.
Query Sequence		Q	I	L	M	P	A	L	R	Q	L	E	E	A	F	V	S	A	Q	K	D	P	E	F	Q	A	Q	F	N	D	L	L	K	N	Y	A	G	.	R	P	T	A	L	T	K	C	Q	N	I	T	A	G	T	.	.	.	.	.	.	.	.	N	T	T	L	Y	L	K	R	E	D	L	L	H	.	G	G	A	H	K	T
Query Conservation																																						.																.	.	.	.	.	.	.	.														.
Alig confidence																					.	.	.															.																.	.	.	.	.	.	.	.														.
Template Conservation																					.	.	.
Template Sequence		P	Y	V	G	L	T	E	Q	D	V	N	A	A	H	D	R	L	A	R	.	.	.	F	A	P	Y	L	A	K	A	F	P	Q	T	G	G	M	I	E	S	D	V	V	A	I	P	A	M	Q	K	R	L	E	K	E	Y	G	Q	T	I	N	G	E	M	L	L	K	K	D	S	H	L	A	I	S	G	S	I	K	A
Template Known Secondary structure		G	G	T																	.	.	.									S	T	T																													S							G	G	G		T	T	T	S	B	T
Template Predicted Secondary structure																					.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																										.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Q	V	L	G	Q	A	L	L	A	K	R	M	G	K	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	A	E	T	G	A	G	Q	H	G	V	A	S	A	L	A	S	A	L	L	G	L	K	C	R	I	Y	M	G	A	K	D	V	E	R	Q	S
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation																																																																																	.
Template Sequence		R	G	G	I	Y	E	V	L	T	H	A	E	K	L	A	L	E	A	G	L	L	T	T	D	D	D	Y	S	V	L	L	S	P	E	F	K	Q	F	F	S	Q	Y	S	I	A	V	G	S	T	G	N	L	G	L	S	I	G	I	M	S	A	C	I	G	F	K	V	T	V	H	M	S	A	D	A	R	A	W	K	.
Template Known Secondary structure																				T	S			T	T	S		G	G	G	G	G	S								T	T	S							S	S														T									T	T	S					.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		P	N	V	F	R	M	R	L	M	G	A	E	V	I	P	V	H	S	G	S	A	T	L	K	D	A	C	N	E	A	L	R	D	W	S	G	S	Y	E	T	A	H	Y	M	L	G	T	A	A	G	P	H	P	Y	P	T	I	V	R	E	F	Q	R	M	I	G	E	E	T	K	A	Q	I	L	E	R	E	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence		.	.															.	.	.																								.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation		.	.															.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	K	A	K	L	R	S	H	G	V	T	V	V	E	Y	.	.	.	E	D	D	Y	G	V	A	V	E	Q	G	R	K	A	A	Q	S	D	P	N	C	F	F	.	.	.	.	.	.	.	.	.	.	.	I	S	R	T	L	F	L	G	Y	A	V	A	G	Q	R	L	K	A	Q	F	A	Q	Q	G	R	V	V
Template Known Secondary structure		.	.							T	T							.	.	.	S	S		T	T												T		T	T				.	.	.	.	.	.	.	.	.	.	.											T													T
Template Predicted Secondary structure		.	.															.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				197	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.												.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
			221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure		.																											.	.
Query SS confidence		.																											.	.
Query Sequence		.	G	R	L	P	D	A	V	I	A	C	V	G	G	G	S	N	A	I	G	M	F	A	D	F	I	N	.	.	E	T	N	V	G	L	I	G	V	E	P	G	G	H	G	I	E	T	G	E	H	G	A	P	L	K	H	G	R	V	G	I	Y	F	G	M	K	A	P	M	M	Q	T	E	D	G	Q	I	E	E	S
Query Conservation		.																											.	.
Alig confidence		.																											.	.														.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Sequence		D	A	S	H	P	L	F	V	Y	L	P	C	G	V	G	G	G	P	G	G	V	A	F	G	L	K	L	A	F	G	D	N	V	H	C	F	F	A	E	P	T	H	.	.	.	.	S	P	C	M	L	L	G	V	Y	T	G	L	H	D	A	I	S	V	Q	D	I	G	.	.	.	.	.	.	.	.	.	I	D	N
Template Known Secondary structure		S	S	S	S									S	S	S															G	G	G									T	T	.	.	.	.											S		G	G	G			S	T	T	T	T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.	.	.	.																							.	.	.	.	.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.					.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.										.	330	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.												.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	I	S	A	G	L	D	F	P	S	V	G	P	Q	H	A	Y	L	N	S	T	G	R	A	D	Y	V	S	I	T	D	D	E	A	L	E	A	F	K	T	L	C	L	H	E	G	I	I	P	A	L	E	S	S	H	A	L	A	H	A	L	K	M	M	R	.	.	.	.	.	.	.	.	.	.	.	E	N	P
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	A	A	D	G	L	A	V	G	R	A	S	G	F	V	G	R	A	M	E	R	L	L	D	G	L	Y	T	L	D	D	Q	T	M	Y	D	M	L	G	W	L	A	Q	E	E	G	I	R	L	E	P	S	A	L	A	G	M	A	G	P	Q	R	I	C	A	S	V	A	Y	Q	Q	R	H	G	F	S	Q	T	Q
Template Known Secondary structure				S		G	G	G			S	S										G	G	G		S																											G	G	G	G	G	G	G	G															T	T
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	E	Q	L	L	V	V	N	L	S	G	R	G	D	K	D	I	F	T	V	H	D	I	L	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	N	A	T	H	L	V	W	A	T	G	G	G	M	V	P	E	D	E	M	E	Q	Y	L	A	K
Template Known Secondary structure				T									B		T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions