Job Description P0A879 Confidence 21.84% Date Thu Jan 5 11:07:07 GMT 2012 Rank 366 Aligned Residues 68 % Identity 16% Template c2dg2D_ PDB info PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein Resolution 2.45 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.									.	.	.	.	.	.	.	.	110	.	.	.	.	.				.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.															.	.	.																					.
Query SS confidence															.	.	.	.	.	.	.	.															.	.	.																					.
Query Sequence		N	Q	V	L	G	Q	A	L	L	A	K	R	M	.	.	.	.	.	.	.	.	G	K	T	E	I	I	A	E	T	G	A	G	Q	H	.	.	.	G	V	A	S	A	L	A	S	A	L	L	G	L	K	C	R	I	Y	M	G	.	A	K	D	V	E	R	Q	S	P	N	V	F	R	M	R	L	M	G	A	E	V
Query Conservation															.	.	.	.	.	.	.	.															.	.	.																					.
Alig confidence															.	.	.	.	.	.	.	.															.	.	.																					.
Template Conservation
Template Sequence		L	A	G	L	S	C	A	T	A	I	A	K	A	Y	P	P	T	S	X	S	K	S	P	P	T	V	L	V	I	C	G	P	G	N	N	G	G	D	G	L	V	C	A	R	H	L	K	L	F	G	Y	Q	P	T	I	Y	Y	P	K	R	P	N	K	P	L	F	T	G	L	V	T	Q	C	Q	K	X	D	I	P	F
Template Known Secondary structure															S		G	G	G	S	S	S	S	S									S	S																T	T								S	S				S													T	T			B
Template Predicted Secondary structure
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions