 |
Job Description | P03819 | Confidence | 96.81% | Date | Thu Jan 5 10:58:01 GMT 2012 |
Rank | 135 | Aligned Residues | 85 |
% Identity | 18% | Template | c3on5B_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:bh1974 protein; |
PDBTitle: crystal structure of a xanthine dehydrogenase (bh1974) from bacillus2 halodurans at 2.80 a resolution
|
Resolution | 2.80 Å |
|
 |
  |   |
399 | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | P | R | V | I | I | A | G | F | G | R | F | G | Q | I | T | G | R | L | L | L | S | S | G | V | K | M | V | V | L | D | H | D | P | D | H | I | E | T | L | R | K | F | G | M | K | V | F | Y | G | D | A | T | R | M | D | L | L | E | S | A | G | A | A | K | A | E | V | L | I | N | A | I | D | D | P | Q | T | N | L |
Query Conservation |   |
  |   |   |
|
|
|   |
|   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |
|
|
|   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|   |   |   |   |   |
|   |   |
|
|
|   |   |
|   |   |
|
|   |
|   |   |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|
|
|
|
|
|
|
|   |   |
|
|   |
|
|   |   |
|
|
|   |
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|   |
|   |   |
|   |
Template Sequence |   |
K | E | R | L | I | I | F | G | A | G | P | D | V | P | P | L | V | T | F | A | S | N | V | G | F | Y | T | V | V | T | D | W | R | P | N | Q | C | E | K | H | F | F | P | D | A | D | E | I | I | V | D | . |
F | P | A | D | F | L | R | K | F | L | I | R | P | D | D | F | V | L | I | X | T | H | H | F | Q | K | D | Q |
Template Known Secondary structure |   |
|  |  |  |  |  |  |
|
| S | T | T |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  | S |
| G | G | G | G |
| G | G | G |
| T | T |
| S |  |  |  |  | S | . |
|  |  |  |  |  |  |  | S |
|
|
| T | T |
|  |  |  |  |
|
| S |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
| . |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | |
. | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . |
  |
  |   |
479 | 480 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
Query Sequence |   |
Q | L | T | E | M | V |
Query Conservation |   |
  |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|
Template Sequence |   |
E | I | L | H | F | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
  |   |
259 | 260 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|