 |
Job Description | P03819 | Confidence | 95.89% | Date | Thu Jan 5 10:58:01 GMT 2012 |
Rank | 246 | Aligned Residues | 94 |
% Identity | 15% | Template | c3kboB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:glyoxylate/hydroxypyruvate reductase a; |
PDBTitle: 2.14 angstrom crystal structure of putative oxidoreductase (ycdw) from2 salmonella typhimurium in complex with nadp
|
Resolution | 2.14 Å |
|
 |
  |   |
374 | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | |
. | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| . |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | L | V | I | L | N | R | L | E | Q | S | S | T | E | E | A | R | E | A | D | E | I | D | E | E | Q | P | R | . |
V | I | I | A | G | F | G | R | F | G | Q | I | T | G | R | L | L | L | S | S | G | V | K | M | V | V | L | D | H | D | P | D | H | I | E | T | L | R | K | F | G | M | K | V | F | Y | G | D | A | T | R |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |
|
|
|   |
|   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |
|
|
|   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
W | F | R | R | F | D | D | Y | Q | A | L | K | N | Q | A | L | W | K | P | L | P | E | Y | T | R | E | E | F | S | V | G | I | X | G | A | G | V | L | G | A | K | V | A | E | S | L | Q | A | W | G | F | P | L | R | C | W | S | R | S | R | K | . |
. |
. |
. |
. |
S | W | P | G | V | E | S | Y | V | G | R | E | E | L |
Template Known Secondary structure |   |
 |  | T | T |  |  |  |  |  |  |  |  | T | T | T |
|
|
|
|
|
|
|
|
| S | T | T |
|
|  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |  |  |  | S | S |
|
| . | . | . | . | . |
|
| T | T |  |  |  |  |  | S | T | T | T |  |
Template Predicted Secondary structure |   |
 |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
| . | . | . | . | . |
|
|  |  |  |  |  |
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 180 | . | . | . | . |
  |
  |   |
453 | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | D | L | L | E | S | A | G | A | A | K | A | E | V | L | I | N | A | I | D | D | P | Q | T | N |
Query Conservation |   |
  |   |   |
|   |   |
|
|
|   |   |
|   |   |
|
|   |
|   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   | . | . | . | . | . |
|
|
|
|   |   |   |   |
|
|
|   |   |
|
Template Sequence |   |
R | A | F | L | N | Q | . |
. |
. |
. |
. |
T | R | V | L | I | N | L | L | P | N | T | A | Q | T |
Template Known Secondary structure |   |
 |  |  |  |  | T | . | . | . | . | . |
| S |  |  |  |  |
|
|
|
|
| T | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  | . | . | . | . | . |
|
|  |  |  |  |
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
185 | . | . | . | . | 190 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 200 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|