Job Description P03819 Confidence 96.73% Date Thu Jan 5 10:58:01 GMT 2012 Rank 151 Aligned Residues 146 % Identity 16% Template c2ldxA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-lactate dehydrogenase; PDBTitle: characterization of the antigenic sites on the refined 3-2 angstroms resolution structure of mouse testicular lactate3 dehydrogenase c4 Resolution 2.96 Å

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		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.			.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440									.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.																		.	.	.	.	.	.	.	.
Query SS confidence																																					.	.																		.	.	.	.	.	.	.	.
Query Sequence		A	R	E	A	D	E	I	D	E	E	Q	P	R	V	I	I	A	G	F	G	R	F	G	Q	I	T	G	R	L	L	L	S	S	G	V	.	.	K	M	V	V	L	D	H	D	P	D	H	I	E	T	L	R	K	.	.	.	.	.	.	.	.	F	G	M	K	V	F	Y	G	D	A	T	R	M	D	L	L	E	S
Query Conservation																																					.	.																		.	.	.	.	.	.	.	.
Alig confidence																																					.	.																		.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		Q	N	L	V	P	E	D	K	L	S	R	C	K	I	T	V	V	G	V	G	D	V	G	M	A	C	A	I	S	I	L	L	K	G	L	A	D	E	L	A	L	V	D	A	D	T	D	K	L	R	G	E	A	L	D	L	Q	H	G	S	L	F	L	S	T	P	K	I	V	F	G	K	D	Y	N	V	.	.	.	.
Template Known Secondary structure					S	S															S												T	T	T	S		S							S															T	T	T	T		S								S	S	G	G	G	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.																.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510	.				.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.														.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.														.	.	.
Query Sequence		A	G	A	A	K	A	E	V	L	I	N	A	I	D	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	N	L	Q	L	T	E	M	V	K	E	H	F	P	H	L	Q	I	I	A	R	A	R	.	.	D	V	D	H	Y	I	R	L	R	Q	A	G	V	.	.	.	E	K	P	E	R	E	T
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.														.	.	.
Alig confidence		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.														.	.	.
Template Conservation		.	.
Template Sequence		.	.	S	A	N	S	K	L	V	I	I	T	A	G	A	R	M	V	S	G	Q	T	R	L	D	L	L	Q	R	N	V	A	I	M	K	A	I	V	P	G	V	I	Q	N	S	P	D	C	K	I	I	V	V	T	N	P	V	D	I	L	T	Y	V	V	W	K	I	S	G	F	P	V	G	R	V	I	G	S	G	C
Template Known Secondary structure		.	.	G	T	T									S					T	T	T		S	S		T	T											T	T	T					S	T	T							S	S	S														S		T	T	T					T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	G	A	L	K	T	G	R	L	A	L	E	S	L	G	L	G	P	Y	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	D	S	A	R	F	R	Y	L	I	G	E	K	L	G	V	N	P	T	S	C
Template Known Secondary structure																	T			T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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