 |
Job Description | P03819 | Confidence | 96.66% | Date | Thu Jan 5 10:58:01 GMT 2012 |
Rank | 158 | Aligned Residues | 91 |
% Identity | 23% | Template | c2e37B_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:l-lactate dehydrogenase; |
PDBTitle: structure of tt0471 protein from thermus thermophilus
|
Resolution | 2.30 Å |
|
 |
  |   |
400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | |
|
. | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | R | V | I | I | A | G | F | G | R | F | G | Q | I | T | G | R | L | L | L | S | S | G | . |
. |
V | K | M | V | V | L | D | H | D | P | D | H | I | E | T | L | R | K | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
G | M | K | V | F | Y | G | D | A | T | R | M | D | L | L | E | S | A | G | A | A | K | A | E | V | L | I |
Query Conservation |   |
  |   |
|
|
|   |
|   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |
| . | . |   |   |   |   |
|
|
|   |
|   |   |   |
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . |
|   |   |   |   |   |
|
|
|   |   |   |   |   |
|   |   |
|
|
|   |   |
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
|
|
|
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|   |
|   |
|   |   |   |   |   |   |   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |   |
|   |   |
|
|
|
|
|
Template Sequence |   |
X | K | V | G | I | V | G | S | G | X | V | G | S | A | T | A | Y | A | L | A | L | L | G | V | A | R | E | V | V | L | V | D | L | D | R | K | L | A | Q | A | H | A | E | D | I | L | H | A | T | P | F | A | H | P | V | W | V | R | A | G | S | . |
. |
. |
. |
. |
. |
. |
. |
Y | G | D | L | E | G | A | R | A | V | V |
Template Known Secondary structure |   |
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T | G | G | G | S |
|
|
|  |  |  |  |
|
| . | . | . | . | . | . | . | . | G | G | G | G | T | T |
| S |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 70 | . | . |
  |
  |   |
469 | 470 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | A | I | D | D | P | Q | T | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
L | Q | L | T | E | M | V | K | E | H | F | P | H | L | Q | I | I | A | R | A | R |
Query Conservation |   |
  |
|   |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|
|
|
|
|
|
Template Sequence |   |
L | A | A | G | V | A | R | L | Q | L | L | D | R | N | A | Q | V | F | A | Q | V | V | P | R | V | L | E | A | A | P | E | A | V | L | L | V | A | T | N |
Template Known Secondary structure |   |
 |
|
| S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
|  |  |  |  |
| S | S |
Template Predicted Secondary structure |   |
 |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|