Job Description P03819 Confidence 96.63% Date Thu Jan 5 10:58:01 GMT 2012 Rank 159 Aligned Residues 143 % Identity 19% Template c1pzfD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:lactate dehydrogenase; PDBTitle: t.gondii ldh1 ternary complex with apad+ and oxalate Resolution 2.20 Å

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		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.		.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.										.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																																.																								.	.	.	.	.	.	.	.	.
Query SS confidence																																.																								.	.	.	.	.	.	.	.	.
Query Sequence		D	E	I	D	E	E	Q	P	R	V	I	I	A	G	F	G	R	F	G	Q	I	T	G	R	L	L	L	S	S	G	.	V	K	M	V	V	L	D	H	D	P	D	H	I	E	T	L	R	K	F	G	M	K	V	.	.	.	.	.	.	.	.	.	F	Y	G	D	A	T	R	M	D	L	L	E	S	A	G	A	A
Query Conservation																																.																								.	.	.	.	.	.	.	.	.
Alig confidence																																.																								.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.
Template Sequence		P	A	L	V	Q	R	R	K	K	V	A	M	I	G	S	G	M	I	G	G	T	M	G	Y	L	C	A	L	R	E	L	A	D	V	V	L	Y	D	V	V	K	G	M	P	E	G	K	A	L	D	L	S	H	V	T	S	V	V	D	T	N	V	S	V	R	A	E	Y	S	Y	E	A	A	L	.	.	.	.	.	T
Template Known Secondary structure						S									S		S														T									S	S	S	S																T	T										S						.	.	.	.	.	T
Template Predicted Secondary structure																																																																												.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.						.
		463	.	.	.	.	.	.	470	.	.																					.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510				.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.													.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.													.	.	.
Query Sequence		K	A	E	V	L	I	N	A	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	Q	T	N	L	Q	L	T	E	M	V	K	E	H	F	P	H	L	Q	I	I	A	R	A	R	.	.	D	V	D	H	Y	I	R	L	R	Q	A	G	.	.	.	V	E	K	P	E	R	E
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.													.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.													.	.	.
Template Conservation
Template Sequence		G	A	D	C	V	I	V	T	A	G	L	T	K	V	P	G	K	P	D	S	E	W	S	R	N	D	L	L	P	F	N	S	K	I	I	R	E	I	G	Q	N	I	K	K	Y	C	P	K	T	F	I	I	V	V	T	N	P	L	D	C	M	V	K	V	M	C	E	A	S	G	V	P	T	N	M	I	C	G	M	A
Template Known Secondary structure		T		S							S		S	S		T	T			G	G	G			S	G	G	G																				T	T	S							S	S																T	T	S
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	E	G	A	L	K	T	G	R	L	A	L	E	S	L	G	L	G	P	Y	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	M	L	D	S	G	R	F	R	R	Y	V	A	D	A	L	S	V	S	P	R	D	V
Template Known Secondary structure																		T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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