Job Description P03819 Confidence 96.35% Date Thu Jan 5 10:58:01 GMT 2012 Rank 187 Aligned Residues 135 % Identity 16% Template c1gv1D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase; PDBTitle: structural basis for thermophilic protein stability:2 structures of thermophilic and mesophilic malate3 dehydrogenases Resolution 2.5 Å

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		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.			.	.	.	.	.	.	.	430	.	.	.	.	.	.										.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.															.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.															.	.	.	.	.	.	.	.	.
Query Sequence		R	V	I	I	A	G	F	G	R	F	G	Q	I	T	G	R	L	L	L	S	S	G	.	.	V	K	M	V	V	L	D	H	D	P	D	H	I	E	.	.	.	.	.	.	.	.	.	T	L	R	K	F	G	M	K	V	F	Y	G	D	A	T	R	M	D	L	L	E	S	A	G	A	A	K	A	E	V	L	I	N
Query Conservation																								.	.															.	.	.	.	.	.	.	.	.
Alig confidence																								.	.															.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.
Template Sequence		K	I	T	V	I	G	A	G	N	V	G	A	T	T	A	F	R	I	A	D	K	K	L	A	R	E	L	V	L	L	D	V	V	E	G	I	P	Q	G	K	G	L	D	M	Y	E	T	G	P	V	G	L	F	D	T	K	I	T	G	S	N	D	Y	A	D	.	.	.	.	.	.	T	A	D	S	D	I	V	I	I
Template Known Secondary structure									S													T	T			S							S	S	S	S											T	T					T									S		G	G	G	.	.	.	.	.	.	S	T	T		S
Template Predicted Secondary structure																																																																			.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.							.	.	.	70	.	.	.	.	.
		470	.	.						.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.			.	.	.	.	.	.	.	510	.	.				.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																															.	.											.	.	.
Query SS confidence					.	.	.	.	.																															.	.											.	.	.
Query Sequence		A	I	D	.	.	.	.	.	D	P	Q	T	N	L	Q	L	T	E	M	V	K	E	H	F	P	H	L	Q	I	I	A	R	A	R	D	V	D	H	.	.	Y	I	R	L	R	Q	A	G	V	E	.	.	.	K	P	E	R	E	T	F	E	G	A	L	K	T	G	R	L	A	L	E	S	L	G	L	G	P	Y	E
Query Conservation					.	.	.	.	.																															.	.											.	.	.
Alig confidence					.	.	.	.	.																															.	.											.	.	.
Template Conservation
Template Sequence		T	A	G	L	L	L	M	K	N	A	G	I	V	K	E	V	T	D	N	I	M	K	H	S	K	N	P	I	I	I	V	V	S	N	P	L	D	I	M	T	H	V	A	W	V	R	S	G	L	P	K	E	R	V	I	G	M	A	G	V	L	D	A	A	R	F	R	S	F	I	A	M	E	L	G	V	S	M	Q	D
Template Known Secondary structure																							T	T		S	S								S	S													T			G	G	G																									G	G	G
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N
Template Known Secondary structure		B
Template Predicted Secondary structure
Template SS confidence
		166	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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