Job Description P03819 Confidence 94.85% Date Thu Jan 5 10:58:01 GMT 2012 Rank 369 Aligned Residues 102 % Identity 15% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.												390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.																																				.									.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.																																				.									.	.	.	.	.	.
Query Sequence		T	P	I	L	L	V	I	L	N	R	L	E	Q	S	S	T	E	E	A	.	.	.	.	.	.	.	.	.	.	.	R	E	A	D	E	I	D	E	E	Q	P	R	V	I	I	A	G	F	G	R	F	G	Q	I	T	G	R	L	L	L	S	S	G	V	K	.	M	V	V	L	D	H	D	P	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.																																				.									.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.																																				.									.	.	.	.	.	.
Template Conservation
Template Sequence		G	S	I	N	I	G	G	L	Q	Q	F	A	S	E	V	F	K	A	M	N	I	P	Q	I	R	N	P	C	L	P	S	Q	E	K	M	P	E	A	Y	S	A	K	I	A	L	L	G	A	G	P	A	S	I	S	C	A	S	F	L	A	R	L	G	Y	S	D	I	T	I	F	E	K	Q	E	Y	V	G	G	L	S
Template Known Secondary structure																					T				B			T	T	S			G	G	G	S		G	G	G	G									S														T									S	S	S	S		S	T
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
																	433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.			.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	H	I	E	T	L	R	K	F	G	M	K	V	F	Y	G	D	A	T	R	M	D	.	.	L	L	E	S	A	G	A	A	K	A	E	V	L	I	N	A	I	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation
Template Sequence		T	S	E	I	P	Q	F	R	L	P	Y	D	V	V	N	F	E	I	E	L	M	K	D	L	G	V	K	I	I	C	G	K	S	L	S	E	N	E	I	T	L	N	T	L	K	E	E	G	Y	K	A	A	F	I	G	I	G
Template Known Secondary structure				T	S		T	T	T	S														T	T	T						S			B	S	T	T	S	B								T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions