Job Description P0AFD4 Confidence 16.80% Date Thu Jan 5 11:25:58 GMT 2012 Rank 4 Aligned Residues 173 % Identity 14% Template c3rkoN_ PDB info PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	F	A	I	V	P	V	S	P	G	W	V	V	A	D	L	N	I	G	I	L	F	F	L	M	M	A	G	L	A	V	Y	A	V	L	F	A	G	W	S	S	N	N	K	Y	S	L	L	G	A	M	R	A	S	A	Q	T	L	S	Y	E	V	F	L	G	L	S	L	M	G	V	V	A	Q	A	G	S	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	Y	L	L	V	L	I	A	A	L	G	G	I	L	L	A	N	A	N	H	L	A	S	L	F	L	G	I	E	L	I	S	L	P	L	F	G	L	V	G	Y	A	F	R	Q	K	R	S	L	E	A	S	I	K	Y	T	I	L	S	A	A	A	S	S	F	L	L	F	G	M	A	L	V	Y	A	Q	S	G	D	L
Template Known Secondary structure																		T	B		S	S										T	T									T	T	T	T	S																																S	S
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		N	M	T	D	I	V	N	S	Q	A	H	V	W	N	V	I	P	Q	F	F	G	F	I	T	F	A	I	A	G	V	A	V	C	H	R	H	P	F	D	Q	.	.	P	E	A	E	Q	E	L	A	D	G	Y	H	I	E	Y	S	G	M	K	F	G	L	F	F	V	G	E	Y	I	G	I	V	T	I	S	A	L	M
Query Conservation																																										.	.
Alig confidence												.	.	.	.	.	.																									.	.						.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	V	A	L	G	K	N	E	P	.	.	.	.	.	.	L	L	L	A	G	F	G	L	M	I	V	G	L	G	F	K	L	S	L	V	P	F	H	L	W	T	P	D	V	Y	Q	.	.	.	.	.	.	.	.	.	.	G	A	P	A	P	V	S	T	F	L	A	T	A	S	K	I	A	I	F	G	V	V	M
Template Known Secondary structure		S	S	S		S						.	.	.	.	.	.																		T		T	T	S		T								.	.	.	.	.	.	.	.	.	.		S										T
Template Predicted Secondary structure												.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.							.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.											.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	L	F	F	G	G	W	Q	G	P	L	L	P	P	F	I	W	F	A	L	K	T	A	F	F	M	M	M	F	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	F	L	Y	A	P	V	G	D	S	E	A	I	R	V	V	L	A	I	I	A	F	A	S	I	I	F	G	N	L
Template Known Secondary structure								G	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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