Job Description P0AFD4 Confidence 1.35% Date Thu Jan 5 11:25:58 GMT 2012 Rank 91 Aligned Residues 227 % Identity 12% Template c3rkoM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	L	Q	L	V	A	D	M	I	K	M	F	F	K	E	D	W	I	P	K	F	S	D	R	V	I	F	T	L	A	P	M	I	A	F	T	S	L	L	L	A	F	A	I	V	P	V	S	P	G	W	V	V	A	D	L	N	I	G	I	L	F	F	L	M	M	A	G	L	A	V	Y	A	V	L	F	A	G	W
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	L	L	K	T	A	A	Y	G	L	L	R	F	S	L	P	L	F	P	N	A	S	A	E	F	A	P	I	A	M	W	L	G	V	I	G	I	F	Y	G	A	W	M	A	F	.	.	.	.	.	.	.	.	.	.	A	Q	T	D	I	K	R	L	I	A	Y	T	S	V	S	H	M	G	F	V	L	I	A	I
Template Known Secondary structure			T														T	T	T	S																												.	.	.	.	.	.	.	.	.	.	T		S	B
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.											.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	N	N	K	Y	S	L	L	G	A	M	R	A	S	A	Q	T	L	S	Y	E	V	F	L	G	L	S	L	M	G	V	V	A	Q	A	G	S	F	N	M	T	D	I	V	N	S	Q	A	H	V	W	N	V	I	P	Q	F	F	G	F	I	T	F	A	I	A	G	V	A	V	C	H	R	H	P	F	D	Q	P
Query Conservation
Alig confidence																																														.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.
Template Sequence		Y	T	G	S	Q	L	A	Y	Q	G	A	V	I	Q	M	I	A	H	G	L	S	A	A	G	L	F	I	L	C	G	Q	L	Y	E	R	I	H	T	R	D	M	R	M	M	.	.	.	.	.	.	G	G	L	W	S	K	M	K	W	L	P	A	L	S	L	F	F	A	V	A	T	L	G	M	P	G	T	G	N	F
Template Known Secondary structure		T	S																																						B	G	G	G		.	.	.	.	.	.		S	G	G	G	T		S	S													S			T	T	S
Template Predicted Secondary structure																																														.	.	.	.	.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.							.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.					.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																					.	.	.	.
Query SS confidence																																																					.	.	.	.
Query Sequence		E	A	E	Q	E	L	A	D	G	Y	H	I	E	Y	S	G	M	K	F	G	L	F	F	V	G	E	Y	I	G	I	V	T	I	S	A	L	M	V	T	L	F	F	G	G	W	Q	G	P	L	L	P	.	.	.	.	P	F	I	W	F	A	L	K	T	A	F	F	M	M	M	F	I	L	I	R	A	S	L	P	R
Query Conservation																																																					.	.	.	.
Alig confidence												.																																									.	.	.	.
Template Conservation												.
Template Sequence		V	G	E	F	M	I	L	F	G	S	.	F	Q	V	V	P	V	I	T	V	I	S	T	F	G	L	V	F	A	S	V	Y	S	L	A	M	L	H	R	A	Y	F	G	K	A	K	S	Q	I	A	S	Q	E	L	P	G	M	S	L	R	E	L	F	M	I	L	L	L	V	V	L	L	V	L	L	G	F	Y	P	Q
Template Known Secondary structure												.																															S	S	S	S		S	S	T	T		S	S
Template Predicted Secondary structure												.
Template SS confidence
		405	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
		292	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	Y	D	Q	V	M	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	I	L	D	T	S	H	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		484	.	.	.	.	.	490	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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