|   |
33 | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | |
|
|
|
60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | |
. | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
| . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  | . |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | N | T | V | A | H | A | R | K | A | I | H | K | I | L | K | G | N | D | D | R | L | L | V | V | I | G | . |
. |
. |
. |
P | C | S | I | H | D | P | V | A | A | K | E | Y | A | T | R | L | L | A | L | R | E | E | L | K | D | E | L | E | . |
I | V | M | R | V | Y | F | E | K | P | R | T | T | V | G | W | K | G | L |
Query Conservation |   |
  |   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |
|   |
|   |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|   |
|   |   |   |
|   |
|
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |
|   | . |
|
|
|
|   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
Template Conservation |   |
  |
|   |
|
|   |
|
|   |
|
|   |   |
|   |   | . | . | . |
|   |
|
|
|
|
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|   |
|
|   |   |   |   |   |
|   |
|   |
|
|   |
|
|
|   |
|
|
|   |   |
|
| . | . | . | . | . | . |
Template Sequence |   |
A | E | M | V | S | R | I | E | E | D | I | K | S | F | A | D | . |
. |
. |
D | E | T | V | V | I | N | V | A | S | T | E | P | L | P | N | Y | S | E | E | Y | H | G | S | L | E | G | F | E | R | M | I | D | E | D | R | K | E | Y | A | S | A | S | M | L | Y | A | Y | A | A | L | K | L | G | L | . |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  | T | T | T | T |  |  |  |  |
|
| . | . | . | S | S |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  | S |
|  |  |  |  |  |  |  |  |  | T | T |
| T | T | S |
|
|  |  |  |  |  |  |  |  |  |  |  | T | T |
| . | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
124 | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | |
|
|
140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | |
|
|
|
|
|
  |
  |   |
108 | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | |
. | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | N | D | P | H | M | D | N | S | F | Q | I | N | D | G | L | R | I | A | R | K | L | L | L | D | I | N | D | S | G | L | P | A | A | G | E | F | L | . |
D | M | I | T | P | Q | Y | L | A | D | L | M | S | W | G | A | I | G | A | R | T | T | E | S | Q | V | H | R | E | L | A | S | G | L | S | C | P | V | G | F | K |
Query Conservation |   |
|   |
|
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |
|   |
|
|   |   |
|   |   |   |
|
|
|
|
|
|
|   |
| . |
|   |   |   |   |   |
|   |   |
|
|
|
|   |   |   |
|
|
|
|
|   |
|
|
|   |
|
|
|   |
|
|
|
|
|   |
|
|
|
|
|
Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . |   |
|
|
|   |
|
|
|   |   |   |   |   |
|
|
|   |
|
|
|   | . | . | . |
|   |
|
|   |
|
|
|   |
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |
|   |   |
|
|
|   |
|   |   |   |   |
Template Sequence |   |
. |
. |
. |
P | Y | A | N | F | T | P | S | P | G | S | A | I | P | A | L | K | E | L | A | E | . |
. |
. |
K | K | G | V | P | H | A | G | N | D | G | K | A | I | V | A | A | P | L | I | L | D | I | A | R | F | L | L | F | A | K | K | K | G | V | K | G | V | V | K | E | M | A | F | F | F | K | S | P | M | D | T | N |
Template Known Secondary structure |   |
. | . | . |
|  |  |  |
| S | S | S |
| T | T |
| S |  |  |  |  |  |  |  |  | . | . | . | T | T | T |
|  |  |  |  | S | S | B |
|
| T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |
| T | T |
| G | G | G | B | S | S |
| T | T |
|
|
Template Predicted Secondary structure |   |
. | . | . |
|  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . |  |
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
195 | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | |
|
|
. | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . |
  |
  |   |
187 |
Predicted Secondary structure |   |
|
Query SS confidence |   |
|
Query Sequence |   |
N |
Query Conservation |   |
|
Alig confidence |   |
|
Template Conservation |   |
|
Template Sequence |   |
V |
Template Known Secondary structure |   |
|
Template Predicted Secondary structure |   |
|
Template SS confidence |   |
|
  |   |
374 |
  |