Job Description P0AFY6 Confidence 99.90% Date Thu Jan 5 11:27:34 GMT 2012 Rank 4 Aligned Residues 326 % Identity 10% Template c2hydB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 Resolution 3.00 Å

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		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		L	F	A	L	F	W	F	I	Y	S	P	H	R	W	Q	Y	W	S	I	L	G	T	A	L	I	I	F	V	T	W	F	L	V	E	V	G	V	A	V	N	A	W	Y	A	P	F	Y	D	L	I	Q	T	A	L	S	S	P	H	K	V	T	I	E	Q	.	F	Y	R	E	V	G	V	F	L	G	I	A	L	I	A
Query Conservation																																																																		.
Alig confidence																		.	.	.	.	.	.																																											.
Template Conservation																		.	.	.	.	.	.
Template Sequence		M	I	K	R	Y	L	Q	F	V	K	P	Y	K	Y	R	I	.	.	.	.	.	.	F	A	T	I	I	V	G	I	I	K	F	G	I	P	M	L	I	P	L	L	I	K	Y	A	I	D	G	V	I	N	N	H	A	L	T	T	D	E	K	V	H	H	L	T	I	A	I	G	I	A	L	F	I	F	V	I	V	R
Template Known Secondary structure											G	G	G					.	.	.	.	.	.									T	T	T																	T	T	T	T		S	S		T	T	T					T	T	T												T
Template Predicted Secondary structure																		.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.							.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.								.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																															.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.
Query Sequence		V	V	I	S	V	L	N	N	F	F	V	S	H	Y	V	F	R	W	R	T	A	M	N	E	Y	Y	M	A	N	.	.	.	.	.	.	.	W	Q	Q	L	R	H	I	E	G	A	A	Q	R	V	Q	E	D	T	M	R	F	A	S	T	L	E	N	M	G	V	S	F	I	N	A	I	M	T	L	I	A	F	L	P
Query Conservation																															.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	P	I	E	F	I	R	Q	Y	L	A	Q	W	T	S	N	K	I	L	Y	D	I	R	K	K	L	Y	N	H	L	Q	A	L	S	A	R	F	Y	A	N	N	Q	V	G	Q	V	I	S	R	V	I	N	D	V	E	Q	T	K	D	F	I	L	T	G	L	M	N	I	W	L	D	C	I	T	I	I	I	A	L	S
Template Known Secondary structure																																		S							T	S																T
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	V	T	L	S	A	H	V	P	E	L	P	I	I	G	H	I	P	Y	G	L	V	I	A	A	I	V	W	S	L	M	G	T	G	L	L	A	V	V	G	I	K	L	P	G	L	E	F	K	N	Q	R	V	E	A	A	Y	R	K	E	L	V	Y	G	E	D	D	A	T	R	A	T	P	P	T	V	R	E	L
Query Conservation
Alig confidence																		.	.	.	.	.
Template Conservation																		.	.	.	.	.
Template Sequence		I	M	F	F	L	D	V	K	L	T	L	A	A	L	F	I	.	.	.	.	.	F	P	F	Y	I	L	T	V	Y	V	F	F	G	R	L	R	K	L	T	R	E	R	S	Q	A	L	A	E	V	Q	G	F	L	H	E	R	V	Q	G	I	S	V	V	K	S	F	A	I	E	D	N	E	A	K	N	F	D	K	K
Template Known Secondary structure																T		.	.	.	.	.																																														T	T
Template Predicted Secondary structure																		.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170						.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	A	V	R	K	N	Y	F	R	L	Y	F	H	Y	M	Y	F	N	I	A	R	I	L	Y	L	Q	V	D	N	V	F	G	L	F	L	L	F	P	S	I	V	A	G	T	I	T	L	G	L	M	T	Q	I	T	N	V	F	G	Q	V	R	G	A	F	Q	Y	L	I	N	S	W	T	T	L	V	E	L	M	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	T	N	F	L	T	R	A	L	K	H	T	R	W	N	A	Y	S	F	A	A	I	N	T	V	T	D	I	G	P	I	I	V	I	G	V	G	A	Y	L	A	I	S	G	S	I	T	V	G	T	L	A	A	F	V	G	Y	L	E	L	L	F	G	P	L	R	R	L	V	A	S	F	T	T	L	T	Q	S	F	A
Template Known Secondary structure																																											T	T	T	S	S		T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	K	R	L	R	S	F	E	H	E	L	D	G	D	K	I	Q	E	V	T	H	T	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	M	D	R	V	F	Q	L	I	D	E	D	Y	D	I	K	N	G	V	G	A	Q	P	I	E
Template Known Secondary structure											T				S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions