Job Description P0AFY6 Confidence 4.04% Date Thu Jan 5 11:27:34 GMT 2012 Rank 64 Aligned Residues 130 % Identity 15% Template c2bg9B_ PDB info PDB header:ion channel/receptor Chain: B: PDB Molecule:acetylcholine receptor protein, beta chain; PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution. Resolution 4.00 Å

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		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	N	A	I	M	T	L	I	A	F	L	P	V	L	V	T	L	S	A	H	V	P	E	L	P	I	I	G	H	I	P	Y	G	L	V	I	A	A	I	V	W	S	L	M	G	T	G	L	L	A	V	V	G	I	K	L	P	G	L	E	F	K	N	Q	R	V	E	A	A	Y	R	K	E	L	V	Y	G	E	D
Query Conservation
Alig confidence																																																							.
Template Conservation																																																							.
Template Sequence		M	S	L	S	I	S	A	L	L	A	L	T	V	F	L	L	L	L	A	D	K	V	P	E	T	S	L	S	V	P	I	I	I	S	Y	L	M	F	I	M	I	L	V	A	F	S	V	I	L	S	V	V	V	.	L	N	L	H	H	R	S	P	N	T	H	E	A	V	E	A	I	K	Y	I	A	E	Q	L	E	S
Template Known Secondary structure																												T	T	S				S																					.						T		T	T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	T	R	A	T	P	P	T	V	R	E	L	F	S	A	V	R	K	N	Y	F	R	L	Y	F	H	Y	M	Y	F	N	I	A	R	I	L	Y	L	Q	V	D	N	V	F	G	L	F	L	L	F	P	S	I	V	A	G	T	I	T	L
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.
Template Sequence		A	S	E	F	D	D	L	K	K	D	W	Q	Y	V	A	M	V	A	D	.	.	.	.	.	.	.	.	.	.	R	L	F	L	Y	I	F	I	T	M	C	S	I	G	T	F	S	I	F	L	D	A	S	H	N	V	P	P	D	N	P	F
Template Known Secondary structure														S		S					.	.	.	.	.	.	.	.	.	.																										S	G	G	G
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.											.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions