Job Description P25714 Confidence 100.00% Date Thu Jan 5 11:42:16 GMT 2012 Rank 2 Aligned Residues 260 % Identity 98% Template c3bs6B_ PDB info PDB header:membrane protein, protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: 1.8 angstrom crystal structure of the periplasmic domain of2 the membrane insertase yidc Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	G	K	L	I	S	V	K	T	D	V	L	D	L	T	I	N	T	R	G	G	D	V	E	Q	A	L	L	P	A	Y	P	K	E	L	N	S	T	Q	P	F	Q	L	L	E	T	S	P	Q	F	I	Y	Q	A	Q	S	G	L	T	G	R	D	G	P	D	N	P	A	N	G	P	R	P	L	Y	N	V	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	G	K	L	I	S	V	K	T	D	V	L	D	L	T	I	N	T	R	G	G	D	V	E	Q	A	L	L	P	A	Y	P	K	E	L	N	S	T	Q	P	F	Q	L	L	E	T	S	P	Q	F	I	Y	Q	A	Q	S	G	L	T	G	R	D	G	P	D	N	P	A	N	G	P	R	P	L	Y	N	V	E	K
Template Known Secondary structure												S	S							T	B	T	T												S	S	T	T			S					S				T	T											S	T	T		T	T	S	G	G	G	S	S			B		B		S
Template Predicted Secondary structure
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	Y	V	L	A	E	G	Q	N	E	L	Q	V	P	M	T	Y	T	D	A	A	G	N	T	F	T	K	T	F	V	L	K	R	G	D	Y	A	V	N	V	N	Y	N	V	Q	N	A	G	E	K	P	L	E	I	S	S	F	G	Q	L	K	Q	S	I	T	L	P	P	H	L	D	T	G	S	S	N	F	A	L
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	Y	V	L	A	E	G	Q	N	E	L	Q	V	P	X	T	Y	T	D	A	A	G	N	T	F	T	K	T	F	V	L	K	R	G	D	Y	A	V	N	V	N	Y	N	V	Q	N	A	G	E	K	P	L	E	I	S	S	F	G	Q	L	K	Q	S	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S						T	T		S											T	T												T	T														S	S	S														S		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	F	R	G	A	A	Y	S	T	P	D	E	K	Y	E	K	Y	K	F	D	T	I	A	D	N	E	N	L	N	I	S	S	K	G	G	W	V	A	M	L	Q	Q	Y	F	A	T	A	W	I	P	H	N	D	G	T	N	N	F	Y	T	A	N	L	G	N	G	I	A	A	I	G	Y	K	S	Q	P	V	L	V
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	L	F	R	G	A	A	Y	S	T	P	D	E	K	Y	E	K	Y	K	F	D	T	I	A	D	N	E	N	L	N	I	S	S	K	G	G	W	V	A	X	L	Q	Q	Y	F	A	T	A	W	I	P	H	N	D	G	T	N	N	F	Y	T	A	N	L	G	N	G	I	A	A	I	G	Y	K	S	Q	P	V	L	V
Template Known Secondary structure		.										T	T	T												T	T									S								T	T										S	S											T	T
Template Predicted Secondary structure		.
Template SS confidence
			202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	G	Q	T	G	A	M	N	S	T	L	W	V	G	P	E	I	Q	D	K	M	A	A	V	A	P	H	L	D	L	T	V	D	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	P	G	Q	T	G	A	X	N	S	T	L	W	V	G	P	E	I	Q	D	K	X	A	A	V	A	P	H	L	D	L	T	V	D	H
Template Known Secondary structure			T	T																							S	T	T	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions