Job Description P25714 Confidence 42.57% Date Thu Jan 5 11:42:16 GMT 2012 Rank 27 Aligned Residues 246 % Identity 11% Template c2xn1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:alpha-galactosidase; PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																			.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	K	L	I	S	V	K	T	D	V	L	D	L	T	I	N	.	T	R	G	G	D	V	E	Q	A	L	L	P	A	Y	P	K	E	L	N	S	T	Q	P	F	Q	L	L	E	T	S	P	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Y	Q	A	Q	S	G	L	T	G	R
Query Conservation																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	N	K	V	F	H	L	H	N	K	Q	I	S	Y	L	L	S	I	E	D	G	G	T	L	S	H	L	Y	F	G	G	A	V	K	N	Y	N	N	Q	L	K	Y	P	R	L	D	R	G	F	S	G	N	L	P	E	S	L	D	R	T	F	S	R	D	S	L	P	K	E	Y	S	S	A	G	E	M	D	F	H	T
Template Known Secondary structure		T	T	T							S	S									G	G	G												S				S	T	T								T	T					T	T				T	T			T	T	T	S		B	S			B	T	T	S	S			S
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.																		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	G	P	D	N	P	A	N	G	P	R	P	L	Y	N	V	E	K	D	A	Y	V	L	A	E	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	L	Q	V	P	M	T	Y	T	D	A	A	G	N	T	F	T	K	T	F	V	L	K	R	G	D	Y	A	V	N	V	N	Y	N	V
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																																						.
Template Sequence		P	A	T	I	V	R	N	P	D	G	S	N	A	L	F	L	A	Y	K	S	Y	K	I	E	D	G	K	P	D	L	K	G	L	P	H	S	W	T	K	E	D	D	E	A	Q	T	L	I	V	T	L	E	.	D	K	V	S	K	L	E	Y	D	L	L	Y	T	I	Y	R	D	R	P	V	I	V	R	S	V	Q	V
Template Known Secondary structure			S						T	T	S																S					T	T	S						S	S	G	G	G										.		T	T	T	T											T	T	S	S
Template Predicted Secondary structure																																																						.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		Q	N	A	G	E	K	P	L	E	I	S	S	F	G	Q	L	K	Q	S	I	T	L	P	P	H	L	D	T	G	S	S	N	F	A	L	H	T	F	R	G	A	A	Y	S	T	P	D	E	K	Y	E	K	Y	K	F	D	T	I	A	D	N	E	N	L	N	I	S	S	K	G	G	W	V	A	M	L	Q	Q	Y	.
Query Conservation																																																																																	.
Alig confidence																						.	.	.	.	.	.																																																						.
Template Conservation																						.	.	.	.	.	.
Template Sequence		H	N	H	G	E	E	A	V	Y	L	E	K	V	A	S	M	Q	M	D	Y	.	.	.	.	.	.	V	D	K	D	F	E	V	I	T	L	P	G	A	H	A	N	E	R	R	V	Q	R	E	N	I	G	Q	G	I	K	V	F	S	S	Y	R	G	T	S	S	H	Q	M	N	P	F	M	A	L	V	D	H	D	T
Template Known Secondary structure					S	S	S															.	.	.	.	.	.	S	S											B	T	T	B											S									S	S	S	S		S	S										T	T
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.							190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
									260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																			.	.
Query SS confidence		.	.	.	.	.	.	.																																			.	.
Query Sequence		.	.	.	.	.	.	.	F	A	T	A	W	I	P	H	N	D	G	T	N	N	F	Y	T	A	N	L	G	N	G	I	A	A	I	G	Y	K	S	Q	P	V	.	.	L	V	Q	P	G	Q	T	G	A	M	N	S	T	L	W	V
Query Conservation		.	.	.	.	.	.	.																																			.	.
Alig confidence		.	.	.	.	.	.	.																																			.	.
Template Conservation
Template Sequence		N	E	F	M	G	E	A	Y	G	F	A	L	A	Y	S	G	N	H	K	F	E	V	E	R	D	Q	F	G	Q	I	H	V	N	T	G	I	N	D	Y	N	F	K	W	K	L	N	P	N	E	E	F	Q	T	P	E	V	L	M	V
Template Known Secondary structure			S	S	S	B										S	S										T	T	S											T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions