Job Description P0A9M0 Confidence 99.20% Date Thu Jan 5 11:10:41 GMT 2012 Rank 97 Aligned Residues 226 % Identity 17% Template c2v1uA_ PDB info PDB header:replication Chain: A: PDB Molecule:cell division control protein 6 homolog; PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna Resolution 3.10 Å

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		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.										.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.															.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.															.	.	.	.	.
Query Sequence		T	D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	.	.	.	.	.	.	.	.	.	G	R	K	Y	V	R	M	A	L	G	G	V	R	D	.	.	.	.	.
Query Conservation																																																						.	.	.	.	.	.	.	.	.															.	.	.	.	.
Alig confidence																			.	.																																		.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation																			.	.
Template Sequence		D	V	L	P	H	R	E	A	E	L	R	R	L	A	E	V	L	.	.	A	P	A	L	R	G	E	K	P	S	N	A	L	L	Y	G	L	T	G	T	G	K	T	A	V	A	R	L	V	L	R	R	L	E	A	R	A	S	S	L	G	V	L	V	K	P	I	Y	V	N	A	R	H	R	E	T	P	Y	R	V	A
Template Known Secondary structure		S			T	T											T	T	.	.	G	G	G	T	S	S										B		T	T	S	S																				T										T	T	T	S		S
Template Predicted Secondary structure																			.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
					388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.			.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure		.	.	.																																.	.
Query SS confidence		.	.	.																																.	.
Query Sequence		.	.	.	E	A	E	I	R	G	H	R	R	T	Y	I	G	S	M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	.	.	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D
Query Conservation		.	.	.																																.	.
Alig confidence		.	.	.																																.	.													.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	I	A	E	A	V	G	V	R	V	P	F	T	G	L	S	V	G	E	V	Y	E	R	L	V	K	R	L	S	R	L	R	G	I	Y	I	I	V	L	D	E	I	D	F	L	P	K	.	.	R	P	G	G	Q	D	L	L	Y	R	I	T	R	I	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S					S	S																T	T	S		S								T	T	T					.	.	S	T	T											G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		463	.	.	.	.	.	.	470	.	.	.	.	.	.					.	.	.	480	.	.	.	.	.			.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.										.	.
Query SS confidence																.	.	.	.										.	.
Query Sequence		L	S	D	V	M	F	V	A	T	S	N	S	M	N	.	.	.	.	I	P	A	P	L	L	D	R	M	.	.	E	V	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T
Query Conservation																.	.	.	.										.	.
Alig confidence		.														.	.	.	.										.	.																								.	.	.	.	.	.	.	.
Template Conservation		.																																																				.	.	.	.	.	.	.	.
Template Sequence		.	E	L	V	S	L	V	G	I	T	N	S	L	G	F	V	E	N	L	E	P	R	V	K	S	S	L	G	E	V	E	L	V	F	P	P	Y	T	A	P	Q	L	R	D	I	L	E	T	R	A	E	E	.	.	.	.	.	.	.	.	A	F	N	P	G	V	L	D	P	D	V	V	P	L	C	A	A	L	A	A
Template Known Secondary structure		.										S		S	T	T	S	S	S	S						T	T	T	T	S					B																			.	.	.	.	.	.	.	.		B		T	T	T	B		S	S
Template Predicted Secondary structure		.																																																				.	.	.	.	.	.	.	.
Template SS confidence
			173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.									.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	A	G	V	R	G	L	E	R	E	I	S	K	L	C	R	K	A	V	K	Q	L	L	L	D	K	S	L	K	H	I	E	I	N	G	D	N	L	H	D	Y	L	G
Query Conservation
Alig confidence							.	.	.																						.	.	.
Template Conservation							.	.	.																						.	.	.
Template Sequence		R	E	H	G	D	.	.	.	A	R	R	A	L	D	L	L	R	V	A	G	E	I	A	E	R	R	R	E	E	.	.	.	R	V	R	R	E	H	V	Y	S	A	R	A
Template Known Secondary structure		S	S	S			.	.	.																		T	T		S	.	.	.		B
Template Predicted Secondary structure							.	.	.																						.	.	.
Template SS confidence
		249	250	.	.	.				.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.				.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions