Job Description P0A9M0 Confidence 99.75% Date Thu Jan 5 11:10:41 GMT 2012 Rank 45 Aligned Residues 207 % Identity 20% Template c1in8A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction dna helicase ruvb; PDBTitle: thermotoga maritima ruvb t158v Resolution 1.90 Å

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		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S
Query Conservation
Alig confidence																																	.																																									.	.	.	.	.	.	.	.
Template Conservation																																	.																																									.	.	.	.	.	.	.	.
Template Sequence		D	E	F	I	G	Q	E	N	V	K	K	K	L	S	L	A	L	E	A	A	K	M	R	G	E	V	L	D	H	V	L	.	L	A	G	P	P	G	L	G	K	T	T	L	A	H	I	I	A	S	E	L	Q	T	N	I	H	V	T	S	G	P	V	L	V	K	Q	G	D	M	A	A	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G			S																			T								.			S	S	T	T	S	S													T								T	T	T			S							.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.																																									.	.	.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.			.	.	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M	N	.	.	I	P	A
Query Conservation																																																																													.	.
Alig confidence		.	.	.	.	.	.	.	.																				.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation		.	.	.	.	.	.	.	.																				.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	I	L	T	S	L	E	R	G	D	V	L	F	I	D	E	I	H	R	L	.	.	.	.	N	K	A	V	E	E	L	L	Y	S	A	I	E	.	.	.	.	.	.	.	.	.	.	.	.	D	F	Q	I	D	I	Q	P	F	T	L	V	G	A	T	V	R	S	G	L	L	S	S	P
Template Known Secondary structure		.	.	.	.	.	.	.	.				T			T	T							T	G	G	G		.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.		S														S		G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																				.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120	.	.	.	.	.	.	.													.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	L	D	R	M	E	V	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T	R	E	A	G	V	R	G	L	E	R	E	I	S	K	L	C	R	K	A	V	K	Q	L
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.																					.	.
Template Sequence		L	R	S	R	F	G	I	I	L	E	L	D	F	Y	T	V	K	E	L	K	E	I	I	K	R	A	.	.	.	.	.	.	.	.	.	.	A	S	L	M	D	V	E	I	E	D	A	A	A	E	M	I	A	K	R	S	.	.	R	G	T	P	R	I	A	I	R	L	T	K	R	V	R	D	M	L	T	V	V	K
Template Known Secondary structure				T	T		S																					.	.	.	.	.	.	.	.	.	.				T	T			B											T	S	.	.	T	T																				T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.																					.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.											.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	D	K	S	L	K	H	I	E	I	N	G	D	N	L	H	D	Y	L	G
Query Conservation
Alig confidence				.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.
Template Sequence		A	D	.	.	.	.	.	.	.	R	I	N	T	D	I	V	L	K	T	M	E
Template Known Secondary structure			S	.	.	.	.	.	.	.	S	B
Template Predicted Secondary structure				.	.	.	.	.	.	.
Template SS confidence
		235	.								.	.	.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions