Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	P	S	I	S	I	N	N	T	S	A	A	Y	P	E	S	I	N	E	N	N	N	D	E	V	N	G	L	V	Q	E	F	K	N	L	F	N	G	K	E	G	I	S	T	C	I	K	H	L	L	E	L	I	K	N	A	I	R	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?			?	?				?			?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	D	D	P	Y	R	F	N	I	N	N	S	S	V	T	Y	I	D	I	D	S	N	D	T	D	H	I	T	I	G	I	D	N	Q	E	P	I	E	L	P	A	N	Y	K	D	K	E	L	V	R	T	I	I	N	D	N	I	V	E	K
Secondary structure
SS confidence
Disorder																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	H	D	I	N	N	K	E	M	I	F	S	A	L	K	E	I	Y	D	G	D	P	G	F	I	F	D	K	I	S	H	K	L	R	H	T	V	T	E	F	D	E	S	G	K	S	E	P	T	D	L	F	T	W	Y	G	K	D	K	K
Secondary structure
SS confidence
Disorder		?																																										?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	D	S	L	A	I	V	I	K	N	K	N	G	N	D	Y	L	S	L	G	Y	Y	D	Q	D	D	Y	H	I	Q	R	G	I	R	I	N	G	D	S	L	T	Q	Y	C	S	E	N	A	R	S	A	S	A	W	F	E	S	S	K	A
Secondary structure
SS confidence
Disorder																														?																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	M	A	E	S	F	A	T	G	S	D	H	Q	V	V	N	E	L	N	G	E	R	L	R	E	P	N	D	V	F	K	R	Y	G	R	A	I	R	Y	D	F	Q	V	D	D	A	K	Y	K	C	D	H	L	K	E	I	V	S	T	L
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?												?																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Sequence		V	G	N	K	I	N	V	G	H	S	Q	K	I	Y	K	H	F	K	D	L	E	G	K	I	E	E	R	L	Q	N	R	Q	A	E	Y	Q	N	E	I	N	Q	P	S	A	P	G	V	N	F	D	D	I
Secondary structure
SS confidence
Disorder										?	?										?											?						?	?	?		?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1u7l chain A Region: 280 - 342 Aligned: 46 Modelled: 46 Confidence: 37.4% Identity: 17% Fold: Vacuolar ATP synthase subunit C Superfamily: Vacuolar ATP synthase subunit C Family: Vacuolar ATP synthase subunit C Phyre2 PDB 2ahp chain B Region: 317 - 334 Aligned: 18 Modelled: 18 Confidence: 32.5% Identity: 50% PDB header:de novo protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper, mutation of lys15 to epsilon-azido-lys Phyre2 PDB 2ahp chain A Region: 317 - 334 Aligned: 18 Modelled: 18 Confidence: 32.1% Identity: 50% PDB header:de novo protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper, mutation of lys15 to epsilon-azido-lys Phyre2 PDB 3eto chain B Region: 135 - 192 Aligned: 54 Modelled: 58 Confidence: 27.3% Identity: 24% PDB header:signaling protein Chain: B: PDB Molecule:neurogenic locus notch homolog protein 1; PDBTitle: 2 angstrom xray structure of the notch1 negative regulatory region2 (nrr) Phyre2 PDB 1ce0 chain B Region: 313 - 339 Aligned: 26 Modelled: 27 Confidence: 26.3% Identity: 35% PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model Phyre2 PDB 1ij2 chain C Region: 317 - 339 Aligned: 22 Modelled: 23 Confidence: 21.9% Identity: 41% PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position Phyre2 PDB 1ij1 chain B Region: 317 - 328 Aligned: 12 Modelled: 12 Confidence: 21.9% Identity: 58% PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position Phyre2 PDB 1ij1 chain C Region: 317 - 328 Aligned: 12 Modelled: 12 Confidence: 21.9% Identity: 58% PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position Phyre2 PDB 1ij1 chain A Region: 317 - 328 Aligned: 12 Modelled: 12 Confidence: 21.9% Identity: 58% PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position Phyre2 PDB 3k7z chain A Region: 317 - 339 Aligned: 22 Modelled: 23 Confidence: 21.8% Identity: 41% PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution Phyre2 PDB 1rb1 chain A Region: 317 - 339 Aligned: 22 Modelled: 23 Confidence: 21.8% Identity: 41% PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution Phyre2 PDB 1rb6 chain C Region: 317 - 339 Aligned: 22 Modelled: 23 Confidence: 21.8% Identity: 41% PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form Phyre2 PDB 1swi chain A Region: 317 - 339 Aligned: 22 Modelled: 23 Confidence: 21.8% Identity: 41% PDB header:leucine zipper Chain: A: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene Phyre2 PDB 1rb1 chain B Region: 317 - 339 Aligned: 22 Modelled: 23 Confidence: 21.8% Identity: 41% PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution Phyre2 PDB 3k7z chain B Region: 317 - 339 Aligned: 22 Modelled: 23 Confidence: 21.8% Identity: 41% PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution Phyre2 PDB 1ij3 chain C Region: 317 - 339 Aligned: 22 Modelled: 23 Confidence: 21.8% Identity: 41% PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position Phyre2 PDB 1ij3 chain B Region: 317 - 339 Aligned: 22 Modelled: 23 Confidence: 21.8% Identity: 41% PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position Phyre2 PDB 2wpz chain A Region: 317 - 328 Aligned: 12 Modelled: 12 Confidence: 21.3% Identity: 58% PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride Phyre2 PDB 1ij0 chain B Region: 317 - 328 Aligned: 12 Modelled: 12 Confidence: 21.2% Identity: 58% PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position Phyre2 PDB 1ij0 chain A Region: 317 - 328 Aligned: 12 Modelled: 12 Confidence: 21.2% Identity: 58% PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position Phyre2 1 d1u7la_ 2 c2ahpB_ 3 c2ahpA_ 4 c3etoB_ 5 c1ce0B_ 6 c1ij2C_ 7 c1ij1B_ 8 c1ij1C_ 9 c1ij1A_ 10 c3k7zA_ 11 c1rb1A_ 12 c1rb6C_ 13 c1swiA_ 14 c1rb1B_ 15 c3k7zB_ 16 c1ij3C_ 17 c1ij3B_ 18 c2wpzA_ 19 c1ij0B_ 20 c1ij0A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1u7la_ 37.4 17 Fold:Vacuolar ATP synthase subunit C Superfamily:Vacuolar ATP synthase subunit C Family:Vacuolar ATP synthase subunit C 2 c2ahpB_ 32.5 50 PDB header:de novo protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper, mutation of lys15 to epsilon-azido-lys 3 c2ahpA_ 32.1 50 PDB header:de novo protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper, mutation of lys15 to epsilon-azido-lys 4 c3etoB_ 27.3 24 PDB header:signaling protein Chain: B: PDB Molecule:neurogenic locus notch homolog protein 1; PDBTitle: 2 angstrom xray structure of the notch1 negative regulatory region2 (nrr) 5 c1ce0B_ 26.3 35 PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model 6 c1ij2C_ 21.9 41 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 7 c1ij1B_ 21.9 58 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 8 c1ij1C_ 21.9 58 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 9 c1ij1A_ 21.9 58 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 10 c3k7zA_ 21.8 41 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 11 c1rb1A_ 21.8 41 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 12 c1rb6C_ 21.8 41 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 13 c1swiA_ 21.8 41 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 14 c1rb1B_ 21.8 41 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 15 c3k7zB_ 21.8 41 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 16 c1ij3C_ 21.8 41 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 17 c1ij3B_ 21.8 41 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 18 c2wpzA_ 21.3 58 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 19 c1ij0B_ 21.2 58 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 20 c1ij0A_ 21.2 58 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 21 c1ij0C_ not modelled 21.2 58 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 22 c2wq1A_ not modelled 20.5 58 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with three ixxntxx motifs2 coordinating bromide 23 c2wq3A_ not modelled 20.5 58 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with three ixxntxx motifs2 coordinating chloride and nitrate 24 c2wpzB_ not modelled 20.1 58 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 25 c2wpzC_ not modelled 19.8 58 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 26 c2o7hF_ not modelled 19.1 36 PDB header:transcription Chain: F: PDB Molecule:general control protein gcn4; PDBTitle: crystal structure of trimeric coiled coil gcn4 leucine zipper 27 c1ij2B_ not modelled 19.1 41 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 28 c2dalA_ not modelled 19.0 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein kiaa0794; PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human fas associated factor 1 protein 29 c1piqA_ not modelled 18.4 50 PDB header:dna binding protein Chain: A: PDB Molecule:protein (general control protein gcn4-piq); PDBTitle: crystal structure of gcn4-piq, a trimeric coiled coil with buried2 polar residues 30 c1zilA_ not modelled 17.7 45 PDB header:leucine zipper Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16gln in the dimeric2 state 31 c1zilB_ not modelled 17.7 45 PDB header:leucine zipper Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16gln in the dimeric2 state 32 c1rb4C_ not modelled 17.3 58 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution 33 c1rb4A_ not modelled 16.6 58 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution 34 c1swiB_ not modelled 16.6 58 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 35 c1ij2A_ not modelled 16.6 58 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 36 c2ztaB_ not modelled 16.5 58 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4 leucine zipper; PDBTitle: x-ray structure of the gcn4 leucine zipper, a two-stranded,2 parallel coiled coil 37 c2ztaA_ not modelled 16.5 58 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4 leucine zipper; PDBTitle: x-ray structure of the gcn4 leucine zipper, a two-stranded,2 parallel coiled coil 38 c1gcmA_ not modelled 16.3 58 PDB header:transcription regulation Chain: A: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 39 c3h25A_ not modelled 16.3 25 PDB header:replication/dna Chain: A: PDB Molecule:replication protein b; PDBTitle: crystal structure of the catalytic domain of primase repb' in complex2 with initiator dna 40 c1zimC_ not modelled 16.1 45 PDB header:leucine zipper Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16gln in the trimeric2 state 41 c1zimB_ not modelled 16.1 45 PDB header:leucine zipper Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16gln in the trimeric2 state 42 c2xzrA_ not modelled 15.9 37 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 43 d1xhmb1 not modelled 15.8 33 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Transducin (heterotrimeric G protein), gamma chain Family:Transducin (heterotrimeric G protein), gamma chain 44 c1zikA_ not modelled 15.8 58 PDB header:leucine zipper Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16lys in the dimeric2 state 45 c1zikB_ not modelled 15.8 58 PDB header:leucine zipper Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16lys in the dimeric2 state 46 c1ce9C_ not modelled 15.8 64 PDB header:helix capping Chain: C: PDB Molecule:protein (gcn4-pmse); PDBTitle: helix capping in the gcn4 leucine zipper 47 c1ce9D_ not modelled 15.8 64 PDB header:helix capping Chain: D: PDB Molecule:protein (gcn4-pmse); PDBTitle: helix capping in the gcn4 leucine zipper 48 c1ce9A_ not modelled 15.8 64 PDB header:helix capping Chain: A: PDB Molecule:protein (gcn4-pmse); PDBTitle: helix capping in the gcn4 leucine zipper 49 c1ce9B_ not modelled 15.8 64 PDB header:helix capping Chain: B: PDB Molecule:protein (gcn4-pmse); PDBTitle: helix capping in the gcn4 leucine zipper 50 c1xhmB_ not modelled 15.5 33 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein g(i)/g(s) PDBTitle: the crystal structure of a biologically active peptide2 (sigk) bound to a g protein beta:gamma heterodimer 51 c1ld4E_ not modelled 15.5 64 PDB header:virus Chain: E: PDB Molecule:general control protein gcn4; PDBTitle: placement of the structural proteins in sindbis virus 52 c2wpyA_ not modelled 15.4 58 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with one vxxnxxx motif2 coordinating chloride 53 c1ij3A_ not modelled 15.2 58 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 54 c1rb4B_ not modelled 15.2 58 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution 55 c1rb6B_ not modelled 15.2 58 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 56 c1rb5C_ not modelled 15.2 58 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a trigonal form 57 c1rb5B_ not modelled 14.8 58 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a trigonal form 58 c1rb6A_ not modelled 14.8 58 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 59 c1rb5A_ not modelled 14.8 58 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a trigonal form 60 c1gcmB_ not modelled 14.5 58 PDB header:transcription regulation Chain: B: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 61 c1gcmC_ not modelled 14.1 58 PDB header:transcription regulation Chain: C: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 62 c1ziiA_ not modelled 14.1 44 PDB header:leucine zipper Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the dimeric2 state 63 c1ziiB_ not modelled 14.1 44 PDB header:leucine zipper Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the dimeric2 state 64 d1pzra_ not modelled 14.0 45 Fold:HLH-like Superfamily:Docking domain B of the erythromycin polyketide synthase (DEBS) Family:Docking domain B of the erythromycin polyketide synthase (DEBS) 65 c1zimA_ not modelled 13.9 48 PDB header:leucine zipper Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16gln in the trimeric2 state 66 c3p8mD_ not modelled 13.8 58 PDB header:protein binding Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: human dynein light chain (dynll2) in complex with an in vitro evolved2 peptide dimerized by leucine zipper 67 c3k7zC_ not modelled 13.6 64 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 68 c1rb1C_ not modelled 13.6 64 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 69 d1qm4a2 not modelled 13.6 31 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 70 d1mxaa2 not modelled 13.1 33 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 71 c1ztaA_ not modelled 12.7 42 PDB header:dna-binding motif Chain: A: PDB Molecule:leucine zipper monomer; PDBTitle: the solution structure of a leucine-zipper motif peptide 72 c2r9iA_ not modelled 12.6 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative phage capsid protein; PDBTitle: crystal structure of putative phage capsid protein domain from2 corynebacterium diphtheriae 73 c1zijB_ not modelled 12.4 44 PDB header:leucine zipper Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the trimeric2 state 74 c1zijA_ not modelled 12.4 44 PDB header:leucine zipper Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the trimeric2 state 75 c1zijC_ not modelled 12.4 44 PDB header:leucine zipper Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the trimeric2 state 76 c1swiC_ not modelled 12.0 64 PDB header:leucine zipper Chain: C: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 77 c1qeyA_ not modelled 12.0 50 PDB header:gene regulation Chain: A: PDB Molecule:protein (regulatory protein mnt); PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange 78 c1qeyB_ not modelled 12.0 50 PDB header:gene regulation Chain: B: PDB Molecule:protein (regulatory protein mnt); PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange 79 c1qeyC_ not modelled 12.0 50 PDB header:gene regulation Chain: C: PDB Molecule:protein (regulatory protein mnt); PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange 80 c1qeyD_ not modelled 12.0 50 PDB header:gene regulation Chain: D: PDB Molecule:protein (regulatory protein mnt); PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange 81 c3e9eB_ not modelled 11.7 18 PDB header:hydrolase Chain: B: PDB Molecule:zgc:56074; PDBTitle: structure of full-length h11a mutant form of tigar from danio rerio 82 c2wq2A_ not modelled 11.4 78 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with three ixxntxx motifs2 coordinating iodide 83 c2ccfA_ not modelled 10.5 50 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel configuration of pli e20s 84 c2wq0A_ not modelled 10.3 78 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with three ixxntxx motifs2 coordinating chloride 85 c1u9fA_ not modelled 10.2 50 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16) 86 c1unwB_ not modelled 9.8 50 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 87 c1unxA_ not modelled 9.7 50 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 88 c1unyB_ not modelled 9.7 50 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 89 c2cceA_ not modelled 9.7 50 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: parallel configuration of pli e20s 90 c2cceB_ not modelled 9.7 50 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: parallel configuration of pli e20s 91 c1uo0A_ not modelled 9.6 50 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 92 c1uo0B_ not modelled 9.6 50 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 93 c1uo1B_ not modelled 9.6 50 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 94 c1u9hA_ not modelled 9.6 50 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of e(22)l(23) 95 c1gclA_ not modelled 9.5 50 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 96 c1gclC_ not modelled 9.5 50 PDB header:leucine zipper Chain: C: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 97 c3f1bA_ not modelled 9.3 10 PDB header:transcription regulator Chain: A: PDB Molecule:tetr-like transcriptional regulator; PDBTitle: the crystal structure of a tetr-like transcriptional regulator from2 rhodococcus sp. rha1. 98 c1gclB_ not modelled 9.2 50 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 99 c1u9fC_ not modelled 9.1 50 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0