Job Description P00861 Confidence 99.98% Date Thu Jan 5 10:56:56 GMT 2012 Rank 31 Aligned Residues 331 % Identity 17% Template c3oo2B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col Resolution 2.37 Å

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		21	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure												.																		.	.	.									.	.	.	.																.
Query SS confidence												.																		.	.	.									.	.	.	.																.
Query Sequence		P	A	E	F	G	C	P	V	W	V	.	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	D	.	.	.	V	V	R	F	A	Q	K	A	.	.	.	.	C	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	.	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q
Query Conservation												.																		.	.	.									.	.	.	.																.
Alig confidence												.																		.	.	.									.	.	.	.																.																					.
Template Conservation																																																																																	.
Template Sequence		S	D	K	Y	Y	R	S	A	Y	M	N	V	D	L	N	A	V	A	S	N	F	K	V	F	S	T	L	H	P	N	K	T	V	M	A	V	V	K	A	N	A	Y	G	L	G	S	V	K	V	A	R	H	L	M	E	N	G	A	T	F	F	A	V	A	T	L	D	E	A	I	E	L	R	M	H	G	I	T	A	.
Template Known Secondary structure							S	S																					S	T	T	S												T	T											T	T	T							S	S										T	T			S	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		T	H	P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	.	W	Y	T	D
Query Conservation																																																																													.
Alig confidence		.	.	.	.									.																											.	.	.																				.	.	.	.	.	.	.	.	.	.					.
Template Conservation		.	.	.	.									.																											.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	K	I	L	V	L	G	V	L	.	P	A	K	D	I	D	K	A	I	Q	H	R	V	A	L	T	V	P	S	K	Q	W	L	K	E	A	.	.	.	I	K	N	I	S	K	K	L	W	L	H	I	K	L	D	T	G	M	G	.	.	.	.	.	.	.	.	.	.	R	L	G	I	K	D	T	K	T
Template Known Secondary structure		.	.	.	.						S			.		G	G	G							T	T		B													.	.	.	T	T	S											B			S	S		.	.	.	.	.	.	.	.	.	.	S	S	S	B
Template Predicted Secondary structure		.	.	.	.									.																											.	.	.																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
						81	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.											.	.	.	.	.	.	140	.	.
		171	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		L	P	A	A	L	D	V	I	Q	R	.	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N
Query Conservation												.
Alig confidence												.																																																										.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.
Template Sequence		Y	Q	E	V	I	E	I	I	Q	Q	Y	E	Q	L	V	F	E	G	V	F	T	H	F	A	C	A	D	E	P	G	D	M	T	T	E	Q	Y	Q	R	F	K	D	M	V	N	E	A	I	K	P	E	Y	I	H	C	Q	N	S	A	G	S	L	L	M	D	C	Q	F	.	.	.	.	.	.	.	C	N	A	I	R
Template Known Secondary structure													T	T											S		T	T	S		S	S														T	T	S				S																S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.								.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		A	A	R	E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	.	.	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A	L	A	A	D	G	R	S	L
Query Conservation																																										.	.
Alig confidence								.	.	.																																.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.																																																														.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	I	S	L	Y	.	.	.	G	Y	Y	P	S	E	Y	V	Q	Q	K	V	K	V	H	L	K	P	S	V	Q	L	I	A	N	V	V	Q	T	K	T	L	Q	A	D	P	T	T	I	A	L	L	P	I	G	Y	A	D	G	Y	L	R	I	M	Q	G	S	F	V	N	V	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				G	G	G	G	.	.	.	T			S						T	T																																S			G	G	G	T			G	G	G	T	T						.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.																																																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.																.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	Y	G	A	S	M	S	S	N	Y	N	S	R	P	L	L
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.														.	.										.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation		.	.	.														.	.										.	.	.	.	.	.	.	.																																								.	.
Template Sequence		.	.	.	N	G	H	Q	C	E	V	I	G	R	V	C	M	.	.	D	Q	T	I	V	K	V	P	D	.	.	.	.	.	.	.	.	Q	V	K	A	G	D	S	V	I	L	I	D	N	H	R	E	S	P	Q	S	V	E	V	V	A	E	K	Q	H	T	I	N	Y	E	V	L	C	N	L	.	.	S	R	R	L
Template Known Secondary structure		.	.	.	T	T							S				S	.	.	S								T	.	.	.	.	.	.	.	.	T			T	T								S		S	S	S	T	T	S								T	T	S									S	.	.		T	T	S
Template Predicted Secondary structure		.	.	.														.	.										.	.	.	.	.	.	.	.																																								.	.
Template SS confidence
					300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.									.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360			.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	V	L	F	D	N	G	Q	A	R	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	R	I	Y	H	D	G	D	Q	R	F	V	T
Template Known Secondary structure							S	S	S
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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