Job Description P00861 Confidence 100.00% Date Thu Jan 5 10:56:56 GMT 2012 Rank 7 Aligned Residues 371 % Identity 31% Template c3n2bD_ PDB info PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae. Resolution 1.80 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.						.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		T	D	T	D	L	T	A	E	N	L	L	R	L	P	A	E	F	G	C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	D	.	.	.	.	.	V	V	R	F	A	Q	K	A	C	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	K	V	D	S	V	S	L	G	E	I	E	R
Query Conservation																																										.	.	.	.	.
Alig confidence																																										.	.	.	.	.
Template Conservation
Template Sequence		G	Q	L	W	A	E	Q	V	P	L	A	D	L	A	N	Q	Y	G	T	P	L	Y	V	Y	S	R	A	T	L	E	R	H	W	H	A	F	D	K	S	V	G	D	Y	P	H	L	I	C	Y	A	V	K	A	N	S	N	L	G	V	L	N	T	L	A	R	L	G	S	G	F	D	I	V	S	V	G	E	L	E	R
Template Known Secondary structure		S	S				T	T												S	S																				T		S	S								G	G	G													T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																					.																					.	.	.	.
Query SS confidence																																					.																					.	.	.	.
Query Sequence		A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	.	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	.	.	.	.	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T
Query Conservation																																					.																					.	.	.	.
Alig confidence											.	.	.	.																							.																					.	.	.	.
Template Conservation											.	.	.	.
Template Sequence		V	L	A	A	G	G	D	P	S	.	.	.	.	K	V	V	F	S	G	V	G	K	T	E	A	E	M	K	R	A	L	Q	L	K	I	K	C	F	N	V	E	S	E	P	E	L	Q	R	L	N	K	V	A	G	E	L	G	V	K	A	P	I	S	L	R	I	N	P	D	V	D	A	K	T	H	P	Y	I	S	T
Template Known Secondary structure					T	T			G	G	.	.	.	.	G						T	T												T	T		S						S															T									B						T	T	T
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																										.																						.	.	.	.
Query SS confidence																										.																						.	.	.	.
Query Sequence		G	G	E	N	S	K	H	G	I	W	Y	T	D	L	P	A	A	L	D	V	I	Q	R	H	.	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	E	.	.	.	.	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y
Query Conservation																										.																						.	.	.	.
Alig confidence																										.																						.	.	.	.																												.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		G	L	R	D	N	K	F	G	I	T	F	D	R	A	A	Q	V	Y	R	L	A	H	S	L	P	N	L	D	V	H	G	I	D	C	H	I	G	S	Q	L	T	A	L	A	P	F	I	D	A	T	D	R	L	L	A	L	I	D	S	L	K	A	E	G	I	H	I	R	H	L	D	V	G	G	G	L	S	.	.	.
Template Known Secondary structure						S	S		S	B		G	G	G											S	T	T																S																					T	T										S				.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	A	K	A	L	L	D	R	L	E	R	.	.	H	R	D	L	E	L	I	F	E	P	G	R	A	I	A	A	N	A	G	V	L	V	T	K	V	E	F	L	K	H	T	E	H	K	N	F	A	I	I	D	A	A	M	N	D	L	I	W	Q	D	I	I	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.										G	G	G	.	.		T	T	S							S					G	G	G														S	S							S			T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template SS confidence
															255	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	H	H	I	S	A	L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H	D	T	G	A	Y	G	A	S	M	S	S	N	Y	N	S	R	P	L	L
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.					.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.					.
Template Sequence		L	R	P	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	G	E	A	Q	T	Y	D	L	V	G	P	V	C	E	T	S	D	F	L	G	K	D	.	.	.	.	.	.	.	R	D	L	V	.	L	Q	E	G	D	L	L	A	V	R	S	S	G	A	Y	G	F	T	M	S	S	N	Y	N	T	R	P	R	V
Template Known Secondary structure		S	S		.	.	.	.	.	.	.	.	.	.	.	.			S										S	S	S		T	T							.	.	.	.	.	.	.					.			T	T						S	S		S	S	S	S	G	G	G				T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.					.
Template SS confidence
		327	.	.													330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.								.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	V	L	F	D	N	G	Q	A	R	L	I	R	R	R	Q	T	I	E	E	L	L	A	L	E	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	V	M	V	D	G	N	K	T	Y	L	V	R	Q	R	E	E	L	S	S	L	W	A	L	E	S	V
Template Known Secondary structure								T	T											G	G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.