Job Description P00861 Confidence 99.92% Date Thu Jan 5 10:56:56 GMT 2012 Rank 46 Aligned Residues 281 % Identity 16% Template c3mubB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: the crystal structure of alanine racemase from streptococcus2 pneumoniae Resolution 2.00 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.												.	.	.	.
Query SS confidence																							.	.	.												.	.	.	.
Query Sequence		C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	.	.	.	D	V	V	R	F	A	Q	K	A	C	S	.	.	.	.	N	I	H	I	L	R	L	M	R	E	Q	G	V	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I	V
Query Conservation																							.	.	.												.	.	.	.
Alig confidence																							.	.	.												.	.	.	.																																		.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.
Template Sequence		P	T	K	A	L	I	H	L	G	A	I	R	Q	N	I	Q	Q	M	G	A	H	I	P	Q	G	T	L	K	L	A	V	V	A	N	A	Y	G	H	G	A	V	A	V	A	K	A	I	Q	D	D	V	D	G	F	C	V	S	N	I	D	E	A	I	E	L	R	Q	A	G	L	S	K	.	.	.	.	.	P	I	L
Template Known Secondary structure		S																				T	S		T	T									T	T	T	T	T										G	G	G		S					S	S											T			S	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.						80	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	W	Y	T	D	L	P	A	A	L	D	V	I
Query Conservation
Alig confidence							.																																									.	.							.	.	.	.	.	.	.	.	.	.
Template Conservation							.																																									.	.							.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	G	V	S	.	E	I	E	A	V	A	L	A	K	E	Y	D	F	T	L	T	V	A	G	L	E	W	I	Q	A	L	L	D	K	E	V	D	L	T	G	L	T	V	H	L	.	.	I	D	S	G	M	G	.	.	.	.	.	.	.	.	.	.	R	I	G	F	R	E	A	S	E	V	E	Q	A	Q	D	L
Template Known Secondary structure				S			.		G	G	G								T																	T	T				T	T						.	.			S	S	S		.	.	.	.	.	.	.	.	.	.	S	S	S			S
Template Predicted Secondary structure							.																																									.	.							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.											.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
			179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.																			.	.
Query SS confidence		.																			.	.
Query Sequence		.	Q	R	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	.	.	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q	I
Query Conservation		.																			.	.
Alig confidence		.																			.	.																																								.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	Q	H	G	V	C	V	E	G	I	F	T	H	F	A	T	A	D	E	E	S	D	D	Y	F	N	A	Q	L	E	R	F	K	T	I	L	A	S	M	K	E	V	P	E	L	V	H	A	S	N	S	A	T	T	L	W	H	V	E	.	T	I	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T											S	S	T	T	S	S																				S	S			S														G	G	.	G			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.																.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.																.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	H	F	V	L	V	D	A	G	F	N	D	L
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	A	V	R	M	G	D	A	M	Y	G	L	N	P	S	G	A	V	L	D	L	P	Y	D	L	I	P	A	L	T	L	E	S	A	L	V	H	V	K	T	V	P	A	G	A	C	M	G	Y	G	A	T	Y	Q	A	D	S	E	Q	V	I	A	T	V	P	I	G	Y	A	D	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.						T	T	T	T	T			T	T	T	T	S	S			S	S													S							T	T				S	G	G	G					S	S								S			G	G	G	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.		.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		M	R	P	A	M	Y	G	S	Y	H	H	I	S	A	L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	.	V	K	A	G	D	Y	L	V	L	H	D
Query Conservation																																																												.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.														.	.							.	.	.	.	.	.	.	.	.				.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.														.	.							.	.	.	.	.	.	.	.	.
Template Sequence		W	T	R	D	M	Q	N	F	S	V	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	Q	A	C	P	I	V	G	R	V	S	M	.	.	D	Q	I	T	I	R	.	.	.	.	.	.	.	.	.	L	P	K	L	Y	P	L	G	T	K	V	T	L	I	G
Template Known Secondary structure				G	G	G	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	T	T					B		S				S	.	.	S						.	.	.	.	.	.	.	.	.		S	S				T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.														.	.							.	.	.	.	.	.	.	.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.														.	.	300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.										.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions