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Job DescriptionP00861
Confidence99.98%DateThu Jan 5 10:56:56 GMT 2012
Rank32Aligned Residues335
% Identity13%Templatec3llxA_
PDB info PDB header:isomeraseChain: A: PDB Molecule:predicted amino acid aldolase or racemase; PDBTitle: crystal structure of an ala racemase-like protein (il1761) from2 idiomarina loihiensis at 1.50 a resolution
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40....... ..50.........60.........70 .........80.........90..
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Query Sequence  RLPAEFGCPVWVYDAQIIRRQIAALKQFD. . . . . VVRFAQKACSNIHILRLMREQGV. KVDSVSLGEIERALAAGYNPQT
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Template Sequence  DWIAHPDTPYLLIDEAKLKSNINYLKQRVESLGSHLRPHLT. LRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYTDL.
Template Known Secondary structure  GGGGSS
SSTT

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SSTTS
SSTT

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   6...10.........20.........30.........40...... ...50.........60.........70.........80...
 
   93......100.........110....... ..120.........130.........140.........150.........160.........170
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Query Sequence  HPDDIVFTADVIDQATLERVSELQI. . PVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTD
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Template Sequence  . . . LYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEIDSDDH. . . . . . . . . . RGGIKPSD
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GGGTT

ST


B
SSSS..........SS
B
TT
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   85....90.........100.........110.........120.........130.........140... ......150.
 
   171........180.........190... ......200.. .......210.........220.........230.........240
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Query Sequence  LPAALDVIQRHHLQLVGIHMHIG. . . . . . SGVDYAHLE. . . . QVCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVD
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Template Sequence  . SKLLTIAKTLGEHFTGLXTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGIHCAITSVGSTPTAHFGEDFSDIS
Template Known Secondary structure  .TGGG


GGGGG

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   152.......160.........170.........180.........190.........200.........210.........220.........230
 
   241........250.........260.........270...... ...280.........290.........300......
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Query Sequence  TEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQ. . . . . . . . . . . . . . SGVLITQVRSVKQMGSRHFVLVDAGFNDLM
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . EVRAGVYTTFDLVXKNIGVCDFSHIAXSVVTTVIGHNKEKN. . WLLTDSGWXALS
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GGGT

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GGG

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   231........240.........250.........260.........270. ........280...
 
   307..310.........320.........330.........340.........350.........360.........370.........380......
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Query Sequence  RPAMYGSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNY
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Template Sequence  RDSGTAGQNRDFGYGQVCKI. DGSVLDGLCVNSTSQEHGVIELSDA. . . . . . YQLEDFPVGHQLRI. . XPNHACATAAXH
Template Known Secondary structure  S

GGGGSSS

BT

T.TS
B

SS


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GGGS
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   284.....290.........300... ......310.........320........ .330.........340.. .......350....
 
   387..390.........400.........410
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Query Sequence  NSRPLLPEVLFDNGQARLIRRRQT
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Template Sequence  . . . . . PVYHVLXSDGSHNTWQRIT
Template Known Secondary structure  .....S
TTS
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   355....360.........370...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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