Job Description P00861 Confidence 99.97% Date Thu Jan 5 10:56:56 GMT 2012 Rank 33 Aligned Residues 314 % Identity 13% Template c3kw3B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from bartonella henselae with2 covalently bound pyridoxal phosphate Resolution 2.04 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.												.	.	.	.														.
Query SS confidence																							.	.												.	.	.	.														.
Query Sequence		C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	.	.	D	V	V	R	F	A	Q	K	A	C	S	.	.	.	.	N	I	H	I	L	R	L	M	R	E	Q	G	V	.	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I	V
Query Conservation																							.	.												.	.	.	.														.
Alig confidence																							.	.												.	.	.	.														.																					.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.
Template Sequence		T	A	I	A	T	I	D	V	R	A	I	V	A	N	Y	R	T	L	A	Q	H	V	A	P	T	E	C	S	A	V	V	A	N	A	Y	G	L	G	A	H	K	I	A	P	A	L	Y	Q	A	G	C	R	T	F	F	V	A	Q	I	E	E	A	L	Q	L	K	A	V	L	P	E	N	.	.	.	.	.	V	M	I
Template Known Secondary structure		S																						T	T	S								T	T	T	T	T												T	T							S	S											S		S	S	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.						.	.	90
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	W	Y	T	D	L	P	A	A	L	D	V	I
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	L	N	G	F	P	H	K	A	E	E	F	V	A	Q	S	G	I	I	P	L	L	N	S	W	S	T	I	E	D	W	Q	T	L	C	Q	K	K	N	K	K	F	P	A	I	I	Q	V	D	T	N	M	S	.	.	.	.	.	.	.	.	.	.	R	L	G	L	D	K	K	E	L	Q	K	L	I	K	N	P
Template Known Secondary structure				T	T				T	T								T	T							S															T									B		S	S	S		.	.	.	.	.	.	.	.	.	.	S	S	S	B
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.											.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
			179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.																			.	.
Query SS confidence		.																			.	.
Query Sequence		.	Q	R	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	.	.	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q	I
Query Conservation		.																			.	.
Alig confidence		.																			.	.																				.	.																					.	.	.	.	.	.	.
Template Conservation																																										.	.																					.	.	.	.	.	.	.
Template Sequence		T	I	F	E	K	A	E	I	K	Y	I	L	S	H	L	A	N	G	E	D	A	S	H	S	S	N	N	K	Q	L	A	A	F	K	R	V	L	A	Q	L	.	.	P	T	C	K	V	S	F	A	N	S	G	G	I	F	L	G	S	D	F	Y	.	.	.	.	.	.	.	F	D	L	V	R	P	G	I	A	L	Y
Template Known Secondary structure		T					S										S	S	T	T		S	S		T															T	S	.	.														T	S		G	G	G		.	.	.	.	.	.	.	T	T					S	G	G	G	G
Template Predicted Secondary structure																																										.	.																					.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.								.	.	.	.	.	.	.	.	230	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.																290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A	L
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation																.	.	.	.	.	.	.																																																										.	.
Template Sequence		G	V	D	P	H	G	K	H	P	T	P	L	K	A	.	.	.	.	.	.	.	V	V	K	V	E	A	Q	V	L	Q	S	R	F	I	D	A	G	I	P	V	G	Y	R	E	S	F	M	T	R	R	P	S	T	L	A	T	I	S	I	G	Y	A	D	G	W	P	R	I	L	S	N	K	G	T	V	Y	F	.	.
Template Known Secondary structure		T			T	T			S	S		S				.	.	.	.	.	.	.																S	S				S	G	G	G					S	S								S			G	G	G	T			G	G	G	T	T	T						.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.																																																										.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.								.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	.	E	V	K	A	G	D	Y	L	V	L	H	D	T	G	A	Y	G	A	S	M	S	S	N	Y	N	S	R	P
Query Conservation																																												.
Alig confidence		.	.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.			.
Template Conservation		.	.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	N	G	H	K	L	P	I	V	G	H	I	S	M	.	.	D	S	I	I	V	D	A	T	D	.	.	.	.	.	.	L	D	K	K	P	Q	R	G	D	W	V	E	L	I	G	P	H	Q	P	L	E	K	V	S	T	D	T	N	T	I	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	T	T					B		S				S	.	.	S							T	T	.	.	.	.	.	.		S	S				T	T							B	T	T	B										T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.
Template SS confidence
												304	.	.	.	.	.	310	.	.	.	.	.	.			.	.	.	320	.	.	.	.	.							.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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