Job Description P00861 Confidence 99.97% Date Thu Jan 5 10:56:56 GMT 2012 Rank 34 Aligned Residues 307 % Identity 21% Template c3gwqB_ PDB info PDB header:lyase Chain: B: PDB Molecule:d-serine deaminase; PDBTitle: crystal structure of a putative d-serine deaminase (bxe_a4060) from2 burkholderia xenovorans lb400 at 2.00 a resolution Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.						.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																														.	.	.	.	.																								.
Query SS confidence																														.	.	.	.	.																								.
Query Sequence		L	P	A	E	F	G	C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	D	.	.	.	.	.	V	V	R	F	A	Q	K	A	C	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	.	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H
Query Conservation																														.	.	.	.	.																								.
Alig confidence																														.	.	.	.	.																								.																				.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		L	N	E	D	V	S	L	P	A	A	V	L	Y	A	D	R	V	E	H	N	L	K	W	X	Q	A	F	V	A	E	Y	G	V	K	L	A	P	H	G	K	T	T	X	A	P	Q	L	F	R	R	Q	L	E	T	G	A	W	G	I	T	L	A	T	A	H	Q	V	R	A	A	Y	H	G	G	V	S	.	.	.	.
Template Known Secondary structure		T	T	T		S		S	S																						S	S	S						B		T	T	T												T	T							S	S										T	T			.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.							.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.																																																				.
Query SS confidence																								.	.	.	.	.	.																																																				.
Query Sequence		P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	.	.	.	.	.	.	Q	I	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	.
Query Conservation																								.	.	.	.	.	.																																																				.
Alig confidence		.	.																					.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.					.
Template Conservation		.	.																																																																.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	R	V	L	X	A	N	Q	L	V	G	R	R	N	X	X	X	V	A	E	L	L	S	D	P	E	F	E	F	F	C	L	V	D	S	V	E	G	V	E	Q	L	G	E	F	F	K	S	V	N	K	Q	L	Q	V	L	L	E	L	G	V	P	G	G	.	.	.	.	.	.	.	.	.	.	R	T	G	V	R
Template Known Secondary structure		.	.										S									T	T	T	T		T	T																							T	T												T	T	S	.	.	.	.	.	.	.	.	.	.	S	S	S	B
Template Predicted Secondary structure		.	.																																																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
				115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.											.	.	180	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.																																		.	.	.	.	.	.
Query SS confidence																	.	.																																		.	.	.	.	.	.
Query Sequence		W	Y	T	D	L	P	A	A	L	D	V	I	Q	R	H	.	.	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	.	.	.	.	.	.	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A
Query Conservation																	.	.																																		.	.	.	.	.	.
Alig confidence																	.	.																																		.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	A	Q	R	N	A	V	L	E	A	I	T	R	Y	P	D	T	L	K	L	A	G	V	E	L	Y	E	G	V	L	K	E	E	H	E	V	R	E	F	L	Q	S	A	V	A	V	T	R	E	L	V	E	Q	E	R	F	A	R	A	P	A	V	L	S	G	A	G	S	A	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S													T	S	T	T	T										G	G	G			S																					T	T			S	S	S	S								S	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.						.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		V	D	T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	.	.	.	.	.	V	L	I	T	Q	V	R	S	V	K	Q	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S
Query Conservation																																										.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																		.	.	.	.	.														.	.	.																.	.
Template Conservation		.	.	.	.	.	.	.																																																				.	.	.																.	.
Template Sequence		.	.	.	.	.	.	.	W	Y	D	V	V	A	E	E	F	V	K	A	S	E	T	G	K	V	E	V	V	L	R	P	G	C	Y	L	T	X	G	E	G	L	L	P	A	L	Q	L	W	A	Y	V	Q	S	I	P	E	P	D	.	.	.	R	A	I	I	G	L	G	K	R	D	S	A	F	D	A	.	.	G	X
Template Known Secondary structure		.	.	.	.	.	.	.	T													T	T	S	S										S					T	T																	T	T	.	.	.					S			T	T	T	S		G	G	G	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																																																				.	.	.																.	.
Template SS confidence
									253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.				.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	H	I	S	A	L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.
Template Sequence		P	E	P	A	R	H	Y	R	P	G	N	E	A	P	R	D	I	A	A	S	E	G	W	E	I	F	G	L	X	D	Q	H	A	Y	L	R	I	P	A	G	A	.	.	.	.	.	.	.	.	D	L	K	V	G	D	X	I	A	F
Template Known Secondary structure										T	T	S	S	S						G	G	G									S	S								T	T		.	.	.	.	.	.	.	.	S			T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.									.	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions