Job Description P00861 Confidence 99.94% Date Thu Jan 5 10:56:56 GMT 2012 Rank 42 Aligned Residues 285 % Identity 21% Template c3e6eC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from e.faecalis2 complex with cycloserine Resolution 2.50 Å

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		24	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure						.																				.	.	.	.												.	.	.	.														.
Query SS confidence						.																				.	.	.	.												.	.	.	.														.
Query Sequence		F	G	C	P	.	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	.	.	.	.	D	V	V	R	F	A	Q	K	A	C	S	.	.	.	.	N	I	H	I	L	R	L	M	R	E	Q	G	V	.	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H
Query Conservation						.																				.	.	.	.												.	.	.	.														.
Alig confidence						.																				.	.	.	.												.	.	.	.														.																					.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		W	H	R	P	T	R	L	H	I	D	T	Q	A	I	T	E	N	V	Q	K	E	C	Q	R	L	P	E	G	T	A	L	F	A	V	V	K	A	N	G	Y	G	H	G	A	V	E	S	A	K	A	A	K	K	G	G	A	T	G	F	C	V	A	L	L	D	E	A	I	E	L	R	E	A	G	V	Q	D	.	.	.
Template Known Secondary structure		T	T	S	S																			T	T	S		T	T														T											T	T	T							S	S										T	T			S	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.
Predicted Secondary structure																																						.																																						.
Query SS confidence																																						.																																						.
Query Sequence		P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	P	V	N	A	G	S	V	D	M	L	D	Q	.	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	.	W	Y	T	D	L
Query Conservation																																						.																																						.
Alig confidence		.	.									.																										.																								.	.	.	.	.	.	.	.	.	.					.
Template Conservation		.	.									.																																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	P	I	L	I	L	S	V	V	.	D	L	A	Y	V	P	L	L	I	Q	Y	D	L	S	V	T	V	A	T	Q	E	W	L	E	A	A	L	Q	Q	L	T	P	E	S	N	T	P	L	R	V	H	L	K	V	D	T	G	M	G	.	.	.	.	.	.	.	.	.	.	R	I	G	F	L	T	P	E	E	T
Template Known Secondary structure		.	.						S			.		G	G	G							T	T																T	T	S		T	T		S	S								B		S	S	S		.	.	.	.	.	.	.	.	.	.	S	S	S	B
Template Predicted Secondary structure		.	.									.																																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
				82	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.											.	140	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure											.																	.	.
Query SS confidence											.																	.	.
Query Sequence		P	A	A	L	D	V	I	Q	R	.	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	.	.	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W
Query Conservation											.																	.	.
Alig confidence											.																	.	.																																												.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		K	Q	A	V	R	F	V	Q	S	H	K	E	F	L	W	E	G	I	F	T	H	F	S	T	A	D	E	I	D	T	S	Y	F	E	K	Q	A	G	R	F	K	A	V	L	A	V	L	E	E	L	P	R	Y	V	H	V	S	N	S	A	T	A	L	W	H	P	D	V	P	G	N	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T		T	T											S	S	T	T	S	S																	T	T		S	S			S															S	S			S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.																.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.																.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	A	A	R	E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	H	F	V	L	V
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	R	Y	G	V	A	M	Y	G	L	N	P	S	G	N	K	L	A	P	S	Y	A	L	K	P	A	L	R	L	T	S	E	L	I	H	V	K	R	L	A	A	G	E	G	I	G	Y	G	E	T	Y	V	T	E	A	E	E	W	I	G	T	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G	G	T			T	T	T	T	S	S			S	S													S							T	T				S	G	G	G					S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A	L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.	.	.
Template Sequence		P	I	G	Y	A	D	G	W	L	R	H	L	Q	G	F	T	V	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	K	R	C	E	I	V	G	R	V	C	M	.	.	D	Q	C	M	I	R	L	A	E	.	.	.	.	.	.	.	.	E	V	P	V	G	P	V	V	T	L	V
Template Known Secondary structure		S			T	T	T	T			G	G	G	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							S				S	.	.	S							S	S	.	.	.	.	.	.	.	.				S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.	.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.														.	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.									.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions