Job Description P00861 Confidence 99.91% Date Thu Jan 5 10:56:56 GMT 2012 Rank 47 Aligned Residues 280 % Identity 19% Template c3co8B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from oenococcus oeni Resolution 1.70 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.										.	.	.	.																.
Query SS confidence																							.	.	.										.	.	.	.																.
Query Sequence		C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	.	.	.	D	V	V	R	F	A	Q	K	A	.	.	.	.	C	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	.	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I
Query Conservation																							.	.	.										.	.	.	.																.
Alig confidence																							.	.	.										.	.	.	.																.																					.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.
Template Sequence		S	T	R	I	E	F	S	K	S	S	L	A	Y	N	V	Q	Y	T	K	Q	V	S	G	A	K	T	L	W	L	A	V	K	S	N	A	Y	G	H	G	L	L	Q	V	S	K	I	A	R	E	C	G	V	D	G	L	A	V	S	V	L	D	E	G	I	A	I	R	Q	A	G	I	D	D	.	.	.	.	.	F	I
Template Known Secondary structure																										S												T	T									T	T	T	T	T							S	S										T	T			S	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80						.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	.	W	Y	T	D	L	P	A	A	L	D
Query Conservation																																																																							.
Alig confidence								.																																			.	.													.	.	.	.	.	.	.	.	.	.					.
Template Conservation								.																																			.	.													.	.	.	.	.	.	.	.	.	.
Template Sequence		L	I	L	G	P	I	.	D	V	K	Y	A	P	I	A	S	K	Y	H	F	L	T	T	V	S	S	L	D	W	L	K	S	A	D	K	I	L	G	K	E	K	.	.	L	S	V	N	L	A	V	D	T	G	X	N	.	.	.	.	.	.	.	.	.	.	R	I	G	V	R	S	K	K	D	L	K	D	E	I	E
Template Known Secondary structure					S			.		G	G	G							T	T																T	T		T	T			.	.							B		S	S	S		.	.	.	.	.	.	.	.	.	.	S	S	S	B		S
Template Predicted Secondary structure								.																																			.	.													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.											.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		177	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure					.	.																			.
Query SS confidence					.	.																			.
Query Sequence		V	I	Q	.	.	R	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	.	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R	E
Query Conservation					.	.																			.
Alig confidence					.	.																			.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	L	Q	E	H	S	D	H	F	S	Y	D	G	I	F	T	H	F	A	S	S	D	N	P	D	D	H	Y	F	Q	R	Q	K	N	R	W	Y	E	L	I	D	G	L	I	X	P	R	Y	V	H	V	X	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	A	A	X
Template Known Secondary structure						T	T	T	T											S	S	T	T		S																	T	T	S				S					B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.																							.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.																.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																										.
Template Conservation														.																																						.	.	.	.																										.
Template Sequence		Y	H	S	K	E	L	P	G	C	N	S	I	.	A	R	V	G	T	V	V	Y	G	V	E	P	S	E	G	V	L	G	P	I	D	K	L	K	P	V	F	E	L	K	S	A	L	T	F	V	K	.	.	.	.	K	W	I	G	T	L	P	I	G	Y	G	D	G	W	L	A	E	Y	Q	D	F	Q	L	L	I	.
Template Known Secondary structure			S	G	G	G		T	T	S		S		.				S	T	T	T	T	T			T	T	S	S	S	S	S		S	T	T	S											S				.	.	.	.							S			G	G	G	T			G	G	G	T	T						.
Template Predicted Secondary structure														.																																						.	.	.	.																										.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.					.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	D	G	Q	K	C	R	Q	V	G	Q	I	A	X	.	.	D	Q	X	X	V	A	L	P	H	.	.	.	.	.	.	.	.	E	Y	P	I	G	T	E	V	T	L	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	T	T							S				S	.	.	S							S	S	.	.	.	.	.	.	.	.				T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.	.	.
Template SS confidence
														301	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.									.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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