Job Description P00861 Confidence 100.00% Date Thu Jan 5 10:56:56 GMT 2012 Rank 10 Aligned Residues 375 % Identity 34% Template c2yxxA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure analysis of diaminopimelate decarboxylate (lysa) Resolution 1.70 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																.	.	.	.	.
Query SS confidence																																.	.	.	.	.
Query Sequence		L	L	R	L	P	A	E	F	G	C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	.	.	.	.	.	D	V	V	R	F	A	Q	K	A	C	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q
Query Conservation																																.	.	.	.	.
Alig confidence																																.	.	.	.	.
Template Conservation
Template Sequence		L	R	K	V	A	E	I	H	G	T	P	T	Y	V	Y	F	E	E	T	L	R	K	R	S	R	L	V	K	E	V	F	E	G	V	N	L	L	P	T	F	A	V	K	A	N	N	N	P	V	L	L	K	I	L	R	E	E	G	F	G	X	D	V	V	T	K	G	E	L	L	A	A	K	L	A	G	V	P	S	H
Template Known Secondary structure											S	S																				T	T	T	S								G	G	G													T	T							S										T	T			G	G
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.																				.
Query SS confidence																												.																				.
Query Sequence		T	H	P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	.	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	.	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	W	Y	T
Query Conservation																												.																				.
Alig confidence		.	.	.	.																							.																				.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	T	V	V	W	N	G	N	G	K	S	R	D	Q	X	E	H	F	L	R	E	D	V	R	I	V	N	V	D	S	F	E	E	X	E	I	W	R	E	L	N	P	E	G	V	E	Y	F	I	R	V	N	P	E	V	D	A	K	T	H	P	H	I	S	T	G	L	K	K	H	K	F	G	I	P	L	E
Template Known Secondary structure		.	.	.	.	G						S													T	T																					T	T													T	T	T	S										S	S	S	S			G	G
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	P	A	A	L	D	V	I	Q	R	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N
Query Conservation
Alig confidence												.	.																																		.																								.	.	.	.	.	.	.	.	.
Template Conservation												.	.																																		.																								.	.	.	.	.	.	.	.	.
Template Sequence		D	L	D	S	F	X	E	R	F	R	.	.	S	X	N	I	R	G	L	H	V	H	I	G	S	Q	I	T	R	V	E	P	F	V	E	A	F	S	K	V	V	R	A	S	E	.	R	Y	G	F	E	E	I	N	I	G	G	G	W	G	I	N	Y	S	G	E	E	L	D	.	.	.	.	.	.	.	.	.	L	S
Template Known Secondary structure		G									T	.	.	T	S											S	S	B			S																.			T		S								B				S	S	S					.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.																																		.																								.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.										.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	R	E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A	L	A	A	D	G	R	S	L	E	H
Query Conservation
Alig confidence																																																																										.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.
Template Sequence		S	Y	R	E	K	V	V	P	D	L	K	R	F	K	R	V	I	V	E	I	G	R	Y	I	V	A	P	S	G	Y	L	L	L	R	V	V	L	V	K	R	R	H	N	K	A	F	V	V	V	D	G	G	X	N	V	L	I	R	P	A	L	Y	S	A	Y	H	R	I	F	V	L	G	.	.	.	.	.	.	K	Q
Template Known Secondary structure							T	G	G	G	G	T	T		S												G	G	G														T	T							S			T	T	T							T									T	T	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.							300	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H	D	T	G	A	Y	G	A	S	M	S	S	N	Y	N	S	R	P	L	L	P	E	V	L	F	D	.	N	G	Q	A	R	L	I	R	R	R
Query Conservation																																																																							.
Alig confidence																								.	.	.	.	.	.	.																																									.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		G	K	E	X	R	A	D	V	V	G	P	L	C	E	S	G	D	V	I	A	Y	D	.	.	.	.	.	.	.	R	E	L	P	E	V	E	P	G	D	I	I	A	V	E	N	A	G	A	Y	G	Y	T	X	S	N	N	Y	N	S	T	T	R	P	A	E	V	L	V	R	E	N	G	R	I	S	L	I	R	R	R
Template Known Secondary structure				S								S	S	S	S	T	T							.	.	.	.	.	.	.				S				T	T						S	S		S	S	S	S	G	G	G				T	T	T											T	T	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.								.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	I	E	E	L	L	A	L	E	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	E	X	D	I	F	K	D	V	V	X
Template Known Secondary structure								T	T	T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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