Job Description P00861 Confidence 99.74% Date Thu Jan 5 10:56:56 GMT 2012 Rank 53 Aligned Residues 320 % Identity 17% Template c2vd9A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: the crystal structure of alanine racemase from bacillus2 anthracis (ba0252) with bound l-ala-p Resolution 2.1 Å

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		24	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure									.																	.	.	.												.	.	.	.														.
Query SS confidence									.																	.	.	.												.	.	.	.														.
Query Sequence		F	G	C	P	V	W	V	.	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	.	.	.	D	V	V	R	F	A	Q	K	A	C	S	.	.	.	.	N	I	H	I	L	R	L	M	R	E	Q	G	V	.	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P
Query Conservation									.																	.	.	.												.	.	.	.														.
Alig confidence									.																	.	.	.												.	.	.	.									.					.																					.	.	.	.
Template Conservation																																																				.																										.	.	.	.
Template Sequence		F	Y	R	D	T	W	V	E	V	D	L	D	A	I	Y	N	N	V	T	H	I	E	F	I	P	S	D	V	E	I	F	A	V	V	K	G	N	A	Y	G	H	D	Y	V	P	V	A	I	A	L	.	E	A	G	A	T	R	L	A	V	A	F	L	D	E	A	L	V	L	R	R	A	G	I	T	A	.	.	.	.
Template Known Secondary structure				S	S																				S		T	T														T								T	T	.	T	T	T							S	S										T	T			S	.	.	.	.
Template Predicted Secondary structure																																																				.																										.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	W	Y	T	D	L	P	A	A
Query Conservation
Alig confidence		.								.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation		.								.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Sequence		.	P	I	L	V	L	G	P	.	S	P	P	R	D	I	N	V	A	A	E	N	D	V	A	L	T	V	F	Q	E	W	V	D	E	A	I	L	W	D	G	S	S	T	M	Y	H	I	N	F	D	S	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	I	G	I	R	E	R	E	L	.	G	F
Template Known Secondary structure		.						S		.			G	G	G							T	T				B														S	S								B		S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	B						.
Template Predicted Secondary structure		.								.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template SS confidence
			83	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.															.	.	.	.	.	.	140	.	.	.		.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																								.																							.
Query SS confidence																								.																							.
Query Sequence		L	D	V	I	Q	R	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	.	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	.	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R
Query Conservation																								.																							.
Alig confidence																								.																							.																				.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.
Template Sequence		L	S	L	E	G	A	P	F	L	E	L	E	G	V	Y	T	H	F	A	T	A	D	E	V	E	T	S	Y	F	D	Q	Y	N	T	F	L	E	Q	L	S	W	L	E	F	G	V	D	P	F	V	H	T	A	N	S	A	A	T	L	R	F	Q	G	I	T	.	.	.	.	.	.	.	F	N	A	V	R	I	G	I
Template Known Secondary structure				G	G	G		T	T											S	S	T	T	S	S	S		T	T	T																S																	S	S			.	.	.	.	.	.	.	T	T					S	T
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.								.	.	.	.	220	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.														290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.															.							.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Conservation														.	.	.	.															.																																											.	.	.	.	.
Template Sequence		A	M	Y	G	L	S	P	S	V	E	I	R	.	.	.	.	P	F	L	P	F	L	E	P	A	L	S	L	H	T	.	V	A	H	I	K	Q	V	I	G	D	G	I	S	Y	N	V	T	Y	R	T	T	E	E	W	I	A	T	V	A	I	G	Y	A	D	G	W	L	R	R	L	Q	G	.	.	.	.	.	F	E
Template Known Secondary structure		T	T	T	T			S		T	T	T	G	.	.	.	.	G	G													.													S	G	G	G													S			G	G	G	T			G	G	G	T	T	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.															.																																											.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.					240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.						.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.																	.	.	.	.	.	380	.	.
Predicted Secondary structure																																													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	.	E	V	K	A	G	D	Y	L	V	L	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	A	Y	G	A	S	M
Query Conservation																																													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.										.	.							.	.	.	.	.	.	.	.	.			.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.										.	.							.	.	.	.	.	.	.	.	.
Template Sequence		V	L	V	N	G	R	.	.	.	.	.	.	.	.	.	V	P	I	V	G	R	V	T	M	.	.	D	Q	F	M	I	H	.	.	.	.	.	.	.	.	.	L	P	C	E	V	P	L	G	T	V	T	L	I	G	R	Q	G	D	E	Y	I	S	A	T	E	V	A	E	Y	S	G	T	I	N	Y	E	I	I	T
Template Known Secondary structure			B	S				.	.	.	.	.	.	.	.	.					S				S	.	.	S						.	.	.	.	.	.	.	.	.		S	S				T	T									T	T													T	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.										.	.							.	.	.	.	.	.	.	.	.
Template SS confidence
		302	.	.	.	.	.										.	.	310	.	.	.	.	.	.			.	.	.	320	.	.										.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	N	Y	N	S	R	P	L	L	P	E	V	L	F	D	N	G	Q	A	R	L	I	R
Query Conservation
Alig confidence						.	.	.	.
Template Conservation						.	.	.	.
Template Sequence		T	I	S	F	.	.	.	.	R	V	P	R	I	F	I	R	N	G	V	V	E	V	I	N
Template Known Secondary structure		T	S		T	.	.	.	.	T	S						S
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		364	.	.	.					.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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