Job Description P00861 Confidence 100.00% Date Thu Jan 5 10:56:56 GMT 2012 Rank 8 Aligned Residues 376 % Identity 35% Template c2qghA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from helicobacter2 pylori complexed with l-lysine Resolution 2.30 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.
Query Sequence		N	L	L	R	L	P	A	E	F	G	C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	.	.	.	.	.	D	V	V	R	F	A	Q	K	A	C	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	K	V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P
Query Conservation																																	.	.	.	.	.
Alig confidence																																	.	.	.	.	.
Template Conservation
Template Sequence		N	Y	E	E	L	F	Q	T	H	K	T	P	F	Y	L	Y	D	F	D	K	I	K	Q	A	F	L	N	Y	K	E	A	F	K	G	R	K	S	L	I	C	Y	A	L	K	A	N	S	N	L	S	I	L	S	L	L	A	H	L	E	S	G	A	D	C	V	S	I	G	E	I	Q	R	A	L	K	A	G	I	K	P
Template Known Secondary structure												S	S																			T	T		S	S								G	G	G													T	T						S	S										T	T			G
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.					.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																													.																				.	.	.	.
Query SS confidence																													.																				.	.	.	.
Query Sequence		Q	T	H	P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	.	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	.	.	.	.	H	R	V	W	L	R	V	N	P	G	F	G	H	G	H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G
Query Conservation																													.																				.	.	.	.
Alig confidence			.	.	.	.																							.																				.	.	.	.
Template Conservation			.	.	.	.
Template Sequence		Y	.	.	.	.	R	I	V	F	S	G	V	G	K	S	A	F	E	I	E	Q	A	L	K	L	N	I	L	F	L	N	V	E	S	F	M	E	L	K	T	I	E	T	I	A	Q	S	L	G	I	K	A	R	I	S	I	R	I	N	P	N	I	D	A	K	T	H	P	Y	I	S	T	G	L	K	E	N	K	F	G
Template Known Secondary structure		G	.	.	.	.	G						T	T												T	T		S						S															T									B								S		G	G	G	B			S	T	T	S	S	S	S
Template Predicted Secondary structure			.	.	.	.
Template SS confidence
		83					.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																	.																							.	.	.	.
Query SS confidence																	.																							.	.	.	.
Query Sequence		I	W	Y	T	D	L	P	A	A	L	D	V	I	Q	R	.	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	E	.	.	.	.	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D
Query Conservation																	.																							.	.	.	.
Alig confidence																	.																							.	.	.	.																															.
Template Conservation																																																																										.
Template Sequence		V	G	E	K	E	A	L	E	M	F	L	W	A	K	K	S	A	F	L	E	P	V	S	V	H	F	H	I	G	S	Q	L	L	D	L	E	P	I	I	E	A	S	Q	K	V	A	K	I	A	K	S	L	I	A	L	G	I	D	L	R	F	F	D	V	G	G	G	I	G	V	S	Y	.	E	N	E	E	T	I	K
Template Known Secondary structure		B																S	S											B	S	S	B																							T	T												B				T	.	T	S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A	L
Query Conservation
Alig confidence																	.	.	.	.	.	.																													.	.
Template Conservation																	.	.	.	.	.	.																													.	.
Template Sequence		L	Y	D	Y	A	Q	G	I	L	N	A	L	Q	G	L	.	.	.	.	.	.	D	L	T	I	I	C	E	P	G	R	S	I	V	A	E	S	G	E	L	I	T	Q	V	L	Y	E	K	K	.	.	N	K	R	F	V	I	V	D	A	G	M	N	D	F	L	R	P	S	L	Y	H	A	K	H	A	I	R	V	I
Template Known Secondary structure													T	T	T		.	.	.	.	.	.														T	T	T													.	.								S			T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.																													.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.							.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H	D	T	G	A	Y	G	A	S	M	S	S	N	Y	N	S	R	P	L	L	P	E	V	L	F	D	N	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.																									.	.	.	.	.	.	.																																								.
Template Conservation		.	.	.	.	.	.	.																									.	.	.	.	.	.	.																																								.
Template Sequence		.	.	.	.	.	.	.	T	P	S	E	I	S	P	C	D	V	V	G	P	V	C	E	S	S	D	T	F	L	K	D	.	.	.	.	.	.	.	A	H	L	P	E	L	E	P	G	D	K	I	A	I	E	K	V	G	A	Y	G	S	S	M	A	S	Q	Y	N	S	R	P	K	L	L	E	L	A	L	.	E	D
Template Known Secondary structure		.	.	.	.	.	.	.	S												S	S	S	S	T	T							.	.	.	.	.	.	.								T	T							S		S	S	S	S	G	G	G				T	T	T										.
Template Predicted Secondary structure		.	.	.	.	.	.	.																									.	.	.	.	.	.	.																																								.
Template SS confidence
									312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.								.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.		.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	R	L	I	R	R	R	Q	T	I	E	E	L	L	A	L	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	R	V	I	R	K	R	E	A	L	E	D	L	W	R	L	E	E
Template Known Secondary structure												G	G	G	G	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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